diff --git a/CHANGELOG.md b/CHANGELOG.md index 9c2dda0..5206b2a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,52 @@ All notable changes to seismo-relay are documented here. --- +## v0.15.0 — 2026-05-07 + +### Added + +- **Layered event storage architecture.** Each event now lands as four + files in the per-serial waveform store, each with a clear role: + + - `` — the Blastware-readable binary (BW file). Untouched. + - `.a5.pkl` — the raw 5A frames (regenerative source). + - `.h5` — clean per-channel waveform arrays in physical + units (in/s for geo, psi for mic) plus event metadata (HDF5 with + gzip compression). This is the canonical format for downstream + analysis tools. + - `.sfm.json` — the modern review/metadata sidecar (peaks, + project, source provenance, review state, extensions). + + SQLite (`seismo_relay.db`) is the searchable index over all four. + +- **Plot-ready waveform JSON (`sfm.plot.v1`).** The `/device/event/{idx}/waveform` + and `/db/events/{id}/waveform.json` endpoints now return samples in + physical units with explicit time-axis metadata, peak markers, and + per-channel unit hints — no more guessing the ADC-to-velocity scale + client-side. The webapp waveform viewer was rewritten to consume + this shape. + +- **In-app waveform viewer accuracy fix.** The standalone SFM webapp + viewer was scaling geophone amplitudes by `geoAdcScale / 32767` + (≈ 6.206 / 32767), where `geoAdcScale = 6.206053` is the device's + *in/s per V* hardware constant — not the ADC-counts-to-velocity + factor. This silently scaled every plot ~38% too low for Normal-range + geophones (the correct full-scale is 10.0 in/s, or 1.25 in/s for + Sensitive). Conversion is now done server-side using the geo_range + from compliance config; the client just plots. + +- New `sfm/event_hdf5.py` module: `write_event_hdf5()`, + `read_event_hdf5()`, plus a plot-JSON helper. +- Backfill script extended to also emit `.h5` for existing events. + +### Dependencies + +- Added `h5py>=3.10` and `numpy>=1.24` for the HDF5 storage layer. +- Added `python-multipart>=0.0.7` (required by FastAPI for the + `/db/import/blastware_file` endpoint introduced in this release). + +--- + ## v0.14.3 — 2026-05-05 ### Fixed diff --git a/bridges/ach_server.py b/bridges/ach_server.py index edd4f2e..c048d4c 100644 --- a/bridges/ach_server.py +++ b/bridges/ach_server.py @@ -70,42 +70,77 @@ from minimateplus.transport import SocketTransport from minimateplus.client import MiniMateClient from minimateplus.models import DeviceInfo, Event, MonitorLogEntry from sfm.database import SeismoDb +from sfm.waveform_store import WaveformStore log = logging.getLogger("ach_server") -# ── Per-unit state (downloaded-key set) ─────────────────────────────────────── +# ── Per-unit state (downloaded events index) ────────────────────────────────── # Persisted as /ach_state.json -# Format: +# Format (current — v2): # { # "BE11529": { -# "downloaded_keys": ["01110000", "0111245a"], # hex keys already on disk -# "max_downloaded_key": "0111245a", # highest key ever seen -# "last_seen": "2026-04-11T01:04:36" +# "downloaded_events": { # key_hex → ISO timestamp string +# "01110000": "2026-04-11T00:42:17", +# "0111245a": "2026-04-11T01:04:30" +# }, +# "max_downloaded_key": "0111245a", +# "last_seen": "2026-04-11T01:04:36", +# "serial": "BE11529", +# "peer": "63.43.212.232:51920" # } # } # -# Key-based deduplication works well within a single "key generation" (between -# erases). After the device memory is erased the event counter resets to -# 0x01110000, so the first new event has the SAME key as the very first event -# we ever downloaded. We detect this situation with max_downloaded_key: +# Why (key, timestamp) and not key alone: +# The device's event-key counter resets to 0x01110000 after every memory +# erase (internal or external). A bare-key dedup (the v1 format) cannot +# distinguish a re-recorded event with the same key from one we already +# downloaded. The 0C waveform record's timestamp IS unique per physical +# event, so we pair (key, timestamp) and treat a key with a different +# timestamp as a new event regardless of `max_downloaded_key`. # -# if max(current_device_keys) < max_downloaded_key -# → device was wiped and keys have restarted → treat all device keys as new -# -# After our own erase (--clear-after-download) we also explicitly clear -# downloaded_keys and max_downloaded_key so the next session starts fresh. +# Legacy v1 format (`downloaded_keys: list[str]` only) is auto-migrated on +# read: the keys are kept under a sentinel of "" (empty string) timestamp so +# the (key, timestamp) compare always sees a mismatch and forces a one-time +# re-download. After that pass the state is rewritten in v2 form. _state_lock = threading.Lock() def _load_state(state_path: Path) -> dict: - if state_path.exists(): - try: - with open(state_path) as f: - return json.load(f) - except Exception: - pass - return {} + """ + Load ach_state.json, transparently migrating any legacy + `downloaded_keys: list` entries into the v2 `downloaded_events: dict` + schema. Returns the migrated state. + """ + if not state_path.exists(): + return {} + try: + with open(state_path) as f: + state = json.load(f) + except Exception: + return {} + + # Per-unit migration: legacy list → dict-with-empty-timestamps + for unit_key, unit_state in list(state.items()): + if not isinstance(unit_state, dict): + continue + if "downloaded_events" in unit_state: + continue + legacy_keys = unit_state.get("downloaded_keys") + if isinstance(legacy_keys, list): + unit_state["downloaded_events"] = {k: "" for k in legacy_keys} + log.info( + "ach_state: migrated %s from v1 (downloaded_keys list) → v2 " + "(downloaded_events dict, %d keys with empty timestamps; " + "they will re-validate on next session)", + unit_key, len(legacy_keys), + ) + else: + unit_state["downloaded_events"] = {} + # keep legacy field for one cycle; cleared on next save + unit_state.pop("downloaded_keys", None) + + return state def _save_state(state_path: Path, state: dict) -> None: @@ -139,8 +174,10 @@ class AchSession: max_events: Optional[int], state_path: Path, db: "SeismoDb", + store: "WaveformStore", clear_after_download: bool = False, restart_monitoring: bool = False, + force_redownload: bool = False, ) -> None: self.sock = sock self.peer = peer @@ -150,8 +187,14 @@ class AchSession: self.max_events = max_events self.state_path = state_path self.db = db + self.store = store self.clear_after_download = clear_after_download self.restart_monitoring = restart_monitoring + # `force_redownload` tells this session to ignore ach_state and + # re-download every event currently on the device, regardless of any + # (key, timestamp) match. Useful as a manual override when state has + # become inconsistent with what's actually on disk / in the DB. + self.force_redownload = force_redownload def run(self) -> None: ts = datetime.datetime.now().strftime("%Y%m%d_%H%M%S") @@ -273,11 +316,20 @@ class AchSession: state = _load_state(self.state_path) unit_key = serial or self.peer # fall back to IP if no serial unit_state = state.get(unit_key, {}) - seen_keys: set[str] = set(unit_state.get("downloaded_keys", [])) - # Highest event key ever downloaded from this unit (hex string, 8 chars). - # Used to detect post-erase key reuse — see comment block above. + + # downloaded_events is the v2 (key_hex → timestamp_iso) dict. + # Empty-string timestamps are migrated v1 entries — they force a + # one-time re-download because the (key, timestamp) compare always + # mismatches against any non-empty timestamp from a fresh 0C read. + seen_events: dict[str, str] = dict(unit_state.get("downloaded_events", {})) max_seen_key: str = unit_state.get("max_downloaded_key", "00000000") + if self.force_redownload: + log.info(" --force-redownload-all set — ignoring %d cached " + "(key, timestamp) entries for this session", + len(seen_events)) + seen_events = {} + # Walk the event index (browse-mode, no 5A) to get the actual current # key list. The SUB 08 event_count field is a lifetime "total events # ever recorded" counter that does NOT decrement on erase — confirmed @@ -290,11 +342,10 @@ class AchSession: log.warning(" list_event_keys failed: %s -- falling back to full download", exc) device_keys = None - # Use the walk result as our authoritative current count. current_count = len(device_keys) if device_keys is not None else 0 - log.info(" Unit has %d stored event(s); %d key(s) previously downloaded", - current_count, len(seen_keys)) + log.info(" Unit has %d stored event(s); %d (key, ts) entr(ies) previously downloaded", + current_count, len(seen_events)) if device_keys is not None and current_count == 0: log.info(" [OK] No events on device -- nothing to download") @@ -302,75 +353,29 @@ class AchSession: return if device_keys is not None: - # ── Post-erase detection ────────────────────────────────────── - # After the device memory is erased, new events start from key - # 01110000 again — the same keys we already downloaded. Detect - # this by comparing the device's current highest key against the - # historical maximum. If the device has rolled back below our - # high-water mark, its counter was reset and we must treat all - # its keys as new, regardless of what seen_keys contains. + # ── Post-erase detection (best-effort, key-only signal) ─────── + # After erase the device's key counter resets to 01110000. + # If the device's current max key is below our high-water mark + # we know erase happened. This catches the cleanest case but + # does NOT catch erase-then-record-many-events (where the new + # max may climb past the old max). The (key, timestamp) check + # in get_events() is what handles those. if device_keys and max_seen_key != "00000000": - max_device_key = max(device_keys) # lexicographic; safe because - # keys share the same 4-char prefix + max_device_key = max(device_keys) if max_device_key < max_seen_key: log.info( " Post-erase reset detected: " "device max key %s < historical max %s " - "-- treating all device keys as new", + "-- discarding stale (key, ts) state for this session", max_device_key, max_seen_key, ) - seen_keys = set() # discard stale dedup info for this session + seen_events = {} - new_key_set = set(device_keys) - seen_keys - log.info(" Device has %d key(s): %d new, %d already seen", - len(device_keys), len(new_key_set), len(device_keys) - len(new_key_set)) - if not new_key_set: - log.info(" [OK] All events already downloaded -- nothing to do") - # Refresh state timestamp; preserve max_seen_key unchanged. - state[unit_key] = { - "downloaded_keys": sorted(seen_keys | set(device_keys)), - "max_downloaded_key": max_seen_key, - "last_seen": datetime.datetime.now().isoformat(), - "serial": serial, - "peer": self.peer, - } - _save_state(self.state_path, state) - - # ── Erase even when no new events (if requested) ────────── - # Blastware ACH always erases after every session — even when - # nothing new was downloaded. Without the erase the device - # still sees stored events in its memory and immediately - # retries the call-home, causing the looping we observed. - # Only erase when device actually has events stored; skip - # the erase if device_keys is empty (nothing to erase). - if self.clear_after_download and device_keys: - log.info( - " Clearing device memory (--clear-after-download, " - "no new events but device has %d stored)...", - len(device_keys), - ) - try: - client.delete_all_events() - log.info(" [OK] Device memory cleared") - # Reset state so the next session starts fresh. - state[unit_key] = { - "downloaded_keys": [], - "max_downloaded_key": "00000000", - "last_seen": datetime.datetime.now().isoformat(), - "serial": serial, - "peer": self.peer, - } - _save_state(self.state_path, state) - except Exception as exc: - log.error( - " [WARN] Event deletion failed: %s -- events NOT cleared", - exc, - ) - - log.info("Session complete (no new events) -> %s", session_dir) - return - else: - new_key_set = None # unknown; proceed with full download + # Note: no early-exit "all already downloaded" short-circuit + # here. Without per-event timestamps we cannot tell whether + # device_keys ⊆ seen_events.keys() actually means we have + # those physical events. get_events() will read 0C on its + # skip path and decide per event. # Apply max_events cap # stop_idx: when we know the count from list_event_keys, use it as @@ -388,27 +393,67 @@ class AchSession: ) try: + # Pass `seen_events` (key → ISO timestamp) so the client can + # read 0C on its skip path and only skip 5A when the per-event + # timestamp matches what we already have on disk. When force_- + # redownload is set, seen_events was already cleared above. + # + # Filter out empty-string timestamps (legacy v1 entries) — the + # client's 0C-on-skip-path only trusts entries with a + # populated timestamp; otherwise it falls through to a full + # 5A download. + skip_dict = {k: ts for k, ts in seen_events.items() if ts} + all_events = client.get_events( full_waveform=True, stop_after_index=stop_idx, - skip_waveform_for_keys=seen_keys if seen_keys else None, + skip_waveform_for_events=skip_dict if skip_dict else None, ) - # Filter to events whose keys we haven't saved before. + # New events are those that came back with _a5_frames populated + # (= 5A actually ran on this session). Skipped events have + # _a5_frames = None because the client matched (key, timestamp) + # against skip_dict and bypassed 5A. new_events = [ e for e in all_events - if e._waveform_key is None - or e._waveform_key.hex() not in seen_keys + if getattr(e, "_a5_frames", None) ] skipped = len(all_events) - len(new_events) - log.info(" [OK] Downloaded %d event(s): %d new, %d skipped (already seen)", + log.info(" [OK] Walked %d event(s): %d downloaded, %d skipped (matched (key, ts) in state)", len(all_events), len(new_events), skipped) - if skipped: - log.info(" (skipped %d already-downloaded event(s))", skipped) + + # ── Persist event file + A5 sidecar to the waveform store ── + # Saves ride alongside the existing JSON dump so the on-disk + # event file and events.json reference the same set of events. + waveform_records: dict[str, dict] = {} + for ev in new_events: + if not ev._a5_frames: + continue + try: + rec = self.store.save( + ev, + serial=serial or "UNKNOWN", + a5_frames=ev._a5_frames, + ) + if ev._waveform_key is not None: + waveform_records[ev._waveform_key.hex()] = rec + log.info( + " [WAVE] saved %s (%d bytes)", + rec["filename"], rec["filesize"], + ) + except Exception as exc: + key_hex = ev._waveform_key.hex() if ev._waveform_key else "????????" + log.warning( + " [WARN] Waveform store save failed for %s: %s", + key_hex, exc, + ) if new_events: - _save_json(session_dir / "events.json", [_event_to_dict(e) for e in new_events]) + _save_json( + session_dir / "events.json", + [_event_to_dict(e, waveform_records) for e in new_events], + ) for ev in new_events: pv = ev.peak_values @@ -467,7 +512,10 @@ class AchSession: _session_start = datetime.datetime.now() try: _ev_ins, _ev_skip = self.db.insert_events( - new_events, serial=serial or self.peer, session_id=None + new_events, + serial=serial or self.peer, + session_id=None, + waveform_records=waveform_records, ) _ml_ins, _ml_skip = self.db.insert_monitor_log( new_monitor_entries, session_id=None @@ -502,35 +550,64 @@ class AchSession: ) # ── Update persistent state ─────────────────────────────────── - # Include both triggered-event keys and monitor-log keys in the - # downloaded set so they are not re-processed on the next call-home. - current_event_keys = [ - e._waveform_key.hex() - for e in all_events - if e._waveform_key is not None - ] - current_monitor_keys = [e.key for e in new_monitor_entries] - current_keys = current_event_keys + current_monitor_keys + # Build a fresh (key → ISO timestamp) map from THIS session's + # results. For each event currently on the device, prefer the + # timestamp we just observed (from 0C); fall back to whatever + # was already in seen_events for that key (so we don't lose an + # entry just because get_events skipped it on the (key, ts) + # match path). + def _ts_iso(ev) -> str: + ts = getattr(ev, "timestamp", None) + if ts is None: + return "" + try: + return datetime.datetime( + ts.year, ts.month, ts.day, + ts.hour or 0, ts.minute or 0, ts.second or 0, + ).isoformat() + except Exception: + return str(ts) + + current_events_map: dict[str, str] = {} + for ev in all_events: + if ev._waveform_key is None: + continue + key_hex = ev._waveform_key.hex() + ts_iso = _ts_iso(ev) or seen_events.get(key_hex, "") + current_events_map[key_hex] = ts_iso + + # Monitor-log entries don't have a 0C-style timestamp, but + # they DO have a start_time; use that so the monitor-log keys + # are properly entered into the (key, ts) map. + for ml in new_monitor_entries: + key_hex = ml.key + ts = ml.start_time + ts_iso = ts.isoformat() if ts else seen_events.get(key_hex, "") + # If a triggered event already populated this key, keep + # whichever has a non-empty timestamp. + if key_hex not in current_events_map or not current_events_map[key_hex]: + current_events_map[key_hex] = ts_iso if erased_successfully: - # Device memory is clear. Reset downloaded_keys and the - # high-water mark so the next call-home starts fresh and - # doesn't mis-identify the recycled key 01110000 as "seen". - updated_keys = [] + updated_events: dict[str, str] = {} new_max_key = "00000000" log.info( " State reset after erase -- next session will download " "from key 0 (device counter resets after erase)" ) else: - # Normal (no erase): union of previously-seen + all keys on - # device now. Includes already-seen survivors so we never - # re-download them if the device somehow keeps old records. - updated_keys = sorted(set(seen_keys) | set(current_keys)) - new_max_key = updated_keys[-1] if updated_keys else max_seen_key + # Merge: keep prior (key, ts) entries we still have evidence + # of (for survivors of any partial failure), plus this + # session's authoritative (key, ts) pairs. + updated_events = dict(seen_events) + updated_events.update(current_events_map) + new_max_key = ( + max(updated_events.keys()) + if updated_events else max_seen_key + ) state[unit_key] = { - "downloaded_keys": updated_keys, + "downloaded_events": updated_events, "max_downloaded_key": new_max_key, "last_seen": datetime.datetime.now().isoformat(), "serial": serial, @@ -592,7 +669,10 @@ def _device_info_to_dict(d: DeviceInfo) -> dict: } -def _event_to_dict(e: Event) -> dict: +def _event_to_dict( + e: Event, + waveform_records: Optional[dict[str, dict]] = None, +) -> dict: pv = e.peak_values pi = e.project_info peaks = {} @@ -611,6 +691,11 @@ def _event_to_dict(e: Event) -> dict: for ch, vals in e.raw_samples.items() } samples["__note__"] = "first 20 sample-sets only; see raw_rx.bin for full waveform" + + rec: dict = {} + if waveform_records and e._waveform_key is not None: + rec = waveform_records.get(e._waveform_key.hex(), {}) or {} + return { "timestamp": str(e.timestamp) if e.timestamp else None, "project": pi.project if pi else None, @@ -619,6 +704,9 @@ def _event_to_dict(e: Event) -> dict: "sensor_location": pi.sensor_location if pi else None, "peaks": peaks, "raw_samples_preview": samples, + "blastware_filename": rec.get("filename"), + "blastware_filesize": rec.get("filesize"), + "a5_pickle_filename": rec.get("a5_pickle_filename"), } @@ -640,6 +728,7 @@ def serve(args: argparse.Namespace) -> None: output_dir.mkdir(parents=True, exist_ok=True) state_path = output_dir / "ach_state.json" db = SeismoDb(output_dir / "seismo_relay.db") + store = WaveformStore(output_dir / "waveforms") server_sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) server_sock.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1) @@ -657,6 +746,7 @@ def serve(args: argparse.Namespace) -> None: print(f" Max events per session: {max_ev if max_ev else 'unlimited'}") print(f" Clear device after download: {'YES' if args.clear_after_download else 'no'}") print(f" Restart monitoring after download: {'YES' if args.restart_monitoring else 'no'}") + print(f" Force re-download all (ignore state): {'YES' if args.force_redownload_all else 'no'}") print(f"{'='*60}") print(f"\n Point your test unit's ACEmanager call-home settings to:") print(f" Remote Host: ") @@ -694,8 +784,10 @@ def serve(args: argparse.Namespace) -> None: max_events=max_ev, state_path=state_path, db=db, + store=store, clear_after_download=args.clear_after_download, restart_monitoring=args.restart_monitoring, + force_redownload=args.force_redownload_all, ) t = threading.Thread(target=session.run, daemon=True, name=f"ach-{peer}") t.start() @@ -780,6 +872,17 @@ def parse_args() -> argparse.Namespace: "This mirrors the standard Blastware ACH workflow." ), ) + p.add_argument( + "--force-redownload-all", + action="store_true", + default=False, + help=( + "Manual override: ignore ach_state.json's downloaded_events map " + "for this session and re-download every event currently on the " + "device, regardless of (key, timestamp) match. Useful when state " + "has become inconsistent with the on-disk waveform store / DB." + ), + ) p.add_argument( "--verbose", "-v", action="store_true", diff --git a/minimateplus/client.py b/minimateplus/client.py index 7b1f9eb..048ddac 100644 --- a/minimateplus/client.py +++ b/minimateplus/client.py @@ -449,7 +449,7 @@ class MiniMateClient: proto.confirm_erase_all() log.info("delete_all_events: erase confirmed — device memory cleared") - def get_events(self, full_waveform: bool = False, debug: bool = False, stop_after_index: Optional[int] = None, skip_waveform_for_keys: Optional[set] = None, extra_chunks_after_metadata: int = 1) -> list[Event]: + def get_events(self, full_waveform: bool = False, debug: bool = False, stop_after_index: Optional[int] = None, skip_waveform_for_keys: Optional[set] = None, skip_waveform_for_events: Optional[dict] = None, extra_chunks_after_metadata: int = 1) -> list[Event]: """ Download all stored events from the device using the confirmed 1E → 0A → 0C → 5A → 1F event-iterator protocol. @@ -497,37 +497,24 @@ class MiniMateClient: events: list[Event] = [] idx = 0 + # Legacy bare-key skip set is deprecated: the device's key counter + # resets to 0x01110000 after every memory erase, so a key in this set + # cannot be trusted to identify the same physical event across erases. + # If a caller still passes it, log a warning and ignore — full + # downloads will run for every event so the bug never silently bites. + if skip_waveform_for_keys: + log.warning( + "get_events: skip_waveform_for_keys is deprecated and unsafe " + "(post-erase key reuse); ignoring %d entries. Use " + "skip_waveform_for_events={key: timestamp_iso} instead.", + len(skip_waveform_for_keys), + ) + skip_evts: dict[str, str] = dict(skip_waveform_for_events or {}) + while data8[4:8] != b"\x00\x00\x00\x00": cur_key = key4 # key for this event's 0A/1E-arm/0C/5A calls log.info("get_events: record %d key=%s", idx, cur_key.hex()) - # Fast-advance path: if this key is already downloaded, skip - # 1E-arm/0C/POLL/5A entirely. Only 0A + 1F(browse) are needed - # to advance the device's internal pointer to the next event. - # This is identical to the browse-mode walk in count_events(). - if skip_waveform_for_keys and cur_key.hex() in skip_waveform_for_keys: - log.debug("get_events: key=%s already seen -- fast-advance only", cur_key.hex()) - try: - proto.read_waveform_header(cur_key) - except ProtocolError as exc: - log.warning( - "get_events: 0A failed for key=%s (skip path): %s -- stopping", - cur_key.hex(), exc, - ) - break - try: - key4, data8 = proto.advance_event(browse=True) - except ProtocolError as exc: - log.warning( - "get_events: 1F failed for key=%s (skip path): %s -- stopping", - cur_key.hex(), exc, - ) - break - idx += 1 - if stop_after_index is not None and idx > stop_after_index: - break - continue - ev = Event(index=idx) ev._waveform_key = cur_key @@ -574,72 +561,96 @@ class MiniMateClient: "get_events: 0C failed for key=%s: %s", cur_key.hex(), exc ) - # SUB 1F (download-arm) — send token=0xFE BEFORE POLL+5A to arm the - # device's bulk stream state machine. Cache the returned key as a - # fallback for loop iteration when 5A fails (see iteration block below). - # Confirmed from 4-2-26 capture frames 66-67 (1F before frames 68-73 POLL). - arm_key4: Optional[bytes] = None - try: - arm_key4, _ = proto.advance_event(browse=False) # arm 5A - log.info("get_events: 1F(download) — 5A armed, arm_key=%s", arm_key4.hex()) - except ProtocolError as exc: - log.warning("get_events: 1F(download) arm failed: %s", exc) + # ── Skip-5A decision based on (key, timestamp) match ────── + # If skip_waveform_for_events maps cur_key.hex() to a non-empty + # ISO timestamp matching what we just read from 0C, this is + # the same physical event we already have on disk — bypass + # the 1F(arm)+POLL+5A bulk download. Otherwise (no entry, or + # timestamp mismatch indicating post-erase reuse) fall through + # to the full download. + expected_ts = skip_evts.get(cur_key.hex(), "") + actual_ts = _event_timestamp_iso(ev) + skip_5a = bool(expected_ts and actual_ts and expected_ts == actual_ts) + if skip_5a: + log.info( + "get_events: key=%s (key, ts=%s) match — skipping 5A bulk download", + cur_key.hex(), actual_ts, + ) - # POLL × 3 — BW sends 3 full POLL cycles between 1F and 5A. - # Confirmed from 4-2-26 BW TX capture (frames 68-73 before 5A at 74). - log.info("get_events: POLL × 3 before 5A") - for _p in range(3): + arm_key4: Optional[bytes] = None + a5_ok = False + + if not skip_5a: + # SUB 1F (download-arm) — send token=0xFE BEFORE POLL+5A to arm the + # device's bulk stream state machine. Cache the returned key as a + # fallback for loop iteration when 5A fails (see iteration block below). + # Confirmed from 4-2-26 capture frames 66-67 (1F before frames 68-73 POLL). try: - proto.poll() + arm_key4, _ = proto.advance_event(browse=False) # arm 5A + log.info("get_events: 1F(download) — 5A armed, arm_key=%s", arm_key4.hex()) except ProtocolError as exc: - log.warning("get_events: POLL %d failed: %s", _p, exc) + log.warning("get_events: 1F(download) arm failed: %s", exc) + + # POLL × 3 — BW sends 3 full POLL cycles between 1F and 5A. + # Confirmed from 4-2-26 BW TX capture (frames 68-73 before 5A at 74). + log.info("get_events: POLL × 3 before 5A") + for _p in range(3): + try: + proto.poll() + except ProtocolError as exc: + log.warning("get_events: POLL %d failed: %s", _p, exc) # SUB 5A — bulk waveform stream (uses cur_key, the event set up by 0A+1E+0C). # By default (full_waveform=False): stop after frame 7 for metadata only. # When full_waveform=True: fetch all chunks and decode raw ADC samples. - a5_ok = False - try: - if full_waveform: - log.info( - "get_events: 5A full waveform download for key=%s", cur_key.hex() - ) - a5_frames = proto.read_bulk_waveform_stream( - cur_key, stop_after_metadata=False, max_chunks=128, - include_terminator=True, - ) - if a5_frames: - a5_ok = True - ev._a5_frames = a5_frames # store for write_blastware_file - _decode_a5_metadata_into(a5_frames, ev) - _decode_a5_waveform(a5_frames, ev) + # + # Bypassed when skip_5a is True — the event is left with + # _a5_frames=None, which signals to the caller (e.g. + # ach_server.py) that this event was matched by (key, ts) and + # already has a stored .file in the persistent waveform store. + if not skip_5a: + try: + if full_waveform: log.info( - "get_events: 5A decoded %d sample-sets", - len((ev.raw_samples or {}).get("Tran", [])), + "get_events: 5A full waveform download for key=%s", cur_key.hex() ) - else: - log.info( - "get_events: 5A metadata-only download for key=%s", cur_key.hex() - ) - a5_frames = proto.read_bulk_waveform_stream( - cur_key, stop_after_metadata=True, - include_terminator=True, - extra_chunks_after_metadata=extra_chunks_after_metadata, - max_chunks=128, - ) - if a5_frames: - a5_ok = True - ev._a5_frames = a5_frames # store for write_blastware_file - _decode_a5_metadata_into(a5_frames, ev) - log.debug( - "get_events: 5A metadata client=%r operator=%r", - ev.project_info.client if ev.project_info else None, - ev.project_info.operator if ev.project_info else None, + a5_frames = proto.read_bulk_waveform_stream( + cur_key, stop_after_metadata=False, max_chunks=128, + include_terminator=True, ) - except ProtocolError as exc: - log.warning( - "get_events: 5A failed for key=%s: %s — metadata unavailable", - cur_key.hex(), exc, - ) + if a5_frames: + a5_ok = True + ev._a5_frames = a5_frames # store for write_blastware_file + _decode_a5_metadata_into(a5_frames, ev) + _decode_a5_waveform(a5_frames, ev) + log.info( + "get_events: 5A decoded %d sample-sets", + len((ev.raw_samples or {}).get("Tran", [])), + ) + else: + log.info( + "get_events: 5A metadata-only download for key=%s", cur_key.hex() + ) + a5_frames = proto.read_bulk_waveform_stream( + cur_key, stop_after_metadata=True, + include_terminator=True, + extra_chunks_after_metadata=extra_chunks_after_metadata, + max_chunks=128, + ) + if a5_frames: + a5_ok = True + ev._a5_frames = a5_frames # store for write_blastware_file + _decode_a5_metadata_into(a5_frames, ev) + log.debug( + "get_events: 5A metadata client=%r operator=%r", + ev.project_info.client if ev.project_info else None, + ev.project_info.operator if ev.project_info else None, + ) + except ProtocolError as exc: + log.warning( + "get_events: 5A failed for key=%s: %s — metadata unavailable", + cur_key.hex(), exc, + ) # SUB 1F — loop iteration. # @@ -652,7 +663,14 @@ class MiniMateClient: # Confirmed from 4-3-26 browse-mode captures: browse=True params # are correct for multi-event iteration. Conditional logic added # 2026-04-06 to avoid post-failure state disruption. - if a5_ok: + # + # NEW 2026-05-06: when skip_5a=True we never entered the 5A + # state at all (we read 0A+1E(arm)+0C and chose to bypass). + # 1F(browse) is safe in this scenario — the device's iteration + # pointer is independent of the bulk-stream state machine, and + # we never put it into the half-attempted 5A state that the + # earlier "post-failure 1F disruption" warning is about. + if skip_5a or a5_ok: # 5A succeeded — use browse 1F for reliable key advancement. try: key4, data8 = proto.advance_event(browse=True) @@ -1174,6 +1192,27 @@ class MiniMateClient: # Pure functions: bytes → model field population. # Kept here (not in models.py) to isolate protocol knowledge from data shapes. +def _event_timestamp_iso(event: Event) -> str: + """ + Return a stable ISO-8601 string for the event's 0C-derived timestamp, + or "" if the event has no timestamp populated. + + The format intentionally matches what `bridges/ach_server.py` writes + into `ach_state.json:downloaded_events[*]` so the (key, ts) compare + in get_events()'s skip path is a simple string equality. + """ + ts = getattr(event, "timestamp", None) + if ts is None: + return "" + try: + return datetime.datetime( + ts.year, ts.month, ts.day, + ts.hour or 0, ts.minute or 0, ts.second or 0, + ).isoformat() + except Exception: + return str(ts) + + def _decode_serial_number(data: bytes) -> DeviceInfo: """ Decode SUB EA (SERIAL_NUMBER_RESPONSE) payload into a new DeviceInfo. @@ -1323,29 +1362,36 @@ def _decode_waveform_record_into(data: bytes, event: Event) -> None: Modifies event in-place. """ - # ── Record type ─────────────────────────────────────────────────────────── - # Decoded from byte[1] (sub_code) first so we can gate timestamp parsing. + # ── Record type + format detection ──────────────────────────────────────── + # `record_type` is the user-facing label ("Waveform" for any triggered + # event regardless of timestamp-header layout). `fmt` is the internal + # format code used to pick the right Timestamp parser; it stays + # internal and doesn't leak to the API / sidecar / UI. try: event.record_type = _extract_record_type(data) except Exception as exc: log.warning("waveform record type decode failed: %s", exc) + fmt = _detect_record_format(data) # ── Timestamp ───────────────────────────────────────────────────────────── - # 9-byte format for sub_code=0x10 Waveform records: - # [day][sub_code][month][year:2 BE][unknown][hour][min][sec] - # sub_code=0x10 and sub_code=0x03 have different timestamp byte layouts. - # Both confirmed against Blastware event reports (BE11529, 2026-04-01 and 2026-04-03). - if event.record_type == "Waveform": + # Three timestamp-header layouts have been observed across BE11529 + # firmware S338.17 — each picks a different Timestamp parser: + # "single_shot": 9-byte [day][0x10][month][year:2][unk][h][m][s] + # "continuous": 10-byte [0x10][day][0x10][month][year:2][unk][h][m][s] + # "short": 8-byte [day][month][year:2][unk][h][m][s] + # All decoded into the same Timestamp dataclass — only the byte + # offsets differ. + if fmt == "single_shot": try: event.timestamp = Timestamp.from_waveform_record(data) except Exception as exc: - log.warning("waveform record timestamp decode failed: %s", exc) - elif event.record_type == "Waveform (Continuous)": + log.warning("single_shot record timestamp decode failed: %s", exc) + elif fmt == "continuous": try: event.timestamp = Timestamp.from_continuous_record(data) except Exception as exc: log.warning("continuous record timestamp decode failed: %s", exc) - elif event.record_type == "Waveform (Short)": + elif fmt == "short": try: event.timestamp = Timestamp.from_short_record(data) except Exception as exc: @@ -1523,46 +1569,109 @@ def _decode_a5_waveform( log.warning("_decode_a5_waveform: STRT record truncated (%dB)", len(strt)) return - total_samples = struct.unpack_from(">H", strt, 8)[0] - pretrig_samples = struct.unpack_from(">H", strt, 16)[0] - rectime_seconds = strt[18] + # STRT byte layout (21 bytes; verified against M529LIY6 reference files + # and re-confirmed against live BE11529 captures, 2026-05-08): + # [0:4] b'STRT' + # [4:6] 0xff 0xfe sentinel + # [6:10] end_key 4-byte BE flash address where event ends + # [10:14] start_key 4-byte BE flash address where event starts + # [14:18] device-specific (semantics not pinned; values vary across events + # and don't hold authoritative total_samples / pretrig) + # [18] 0x46 record-type marker (NOT rectime) + # [19] device-specific + # [20] sometimes rectime, sometimes 0 — not reliable + # + # AUTHORITATIVE values must come from compliance_config (sample_rate, + # record_time) and from end_offset - start_offset arithmetic (event size). + # Earlier code claimed STRT[8:10]=total_samples and STRT[16:18]=pretrig; + # those positions actually overlap end_key low-word and dev-specific bytes + # respectively. We surface the address-derived event size so consumers + # can sanity-check chunk-loop bounds, but `total_samples` per channel must + # be derived externally (sample_rate × record_time, or computed from the + # decoded sample count below). + end_key = strt[6:10] + start_key = strt[10:14] + end_offset_in_strt = (end_key[2] << 8) | end_key[3] + start_offset_in_strt = (start_key[2] << 8) | start_key[3] + is_event_1 = (start_offset_in_strt == 0x0000) - event.total_samples = total_samples - event.pretrig_samples = pretrig_samples - event.rectime_seconds = rectime_seconds + # Don't trust STRT for these — leave them as None so the caller can + # backfill from compliance_config (the authoritative source). + event.total_samples = None + event.pretrig_samples = None + event.rectime_seconds = None log.debug( - "_decode_a5_waveform: STRT total_samples=%d pretrig=%d rectime=%ds", - total_samples, pretrig_samples, rectime_seconds, + "_decode_a5_waveform: STRT start_key=%s end_key=%s " + "start_off=0x%04X end_off=0x%04X is_event_1=%s " + "dev-specific[14:18]=%s strt[20]=0x%02X", + start_key.hex(), end_key.hex(), + start_offset_in_strt, end_offset_in_strt, is_event_1, + strt[14:18].hex(), strt[20], ) # ── Collect per-frame waveform bytes with global offset tracking ───────── # global_offset is the cumulative byte count across all frames, used to # compute the channel alignment at each frame boundary. + # + # Frame layout under the v0.14.0+ walk: + # frames_data[0] = probe response (page_addr 0x0000; + # contains STRT + post-STRT data) + # frames_data[1..2] = (event 1 only) metadata pages + # page_addr = 0x1002 / 0x1004 + # frames_data[mid] = sample chunks at flash addresses + # 0x0600, 0x0800, … (page_addr in + # {0x0600..0x1FFE}) + # frames_data[last] = TERM response (page_key=0x0000) + # + # We identify metadata pages by their PAGE ADDRESS at db.data[4:6] (the + # 2-byte counter the device echoes back), NOT by content scan. An earlier + # needle-based detection (b"Project:", b"Client:", etc.) was the wrong + # layer of abstraction: + # • The actual metadata pages 0x1002 / 0x1004 do NOT contain ASCII + # project strings on this firmware (S338.17 / BE11529). + # • The strings physically live at flash address 0x1600 — which falls + # inside the sample-chunk address range. Skipping that frame would + # drop a real sample chunk. + # BW handles the "samples region happens to contain string bytes" case + # by just rendering the bytes verbatim; we do the same. + _METADATA_PAGES = (b"\x10\x02", b"\x10\x04") + chunks: list[tuple[int, bytes]] = [] # (frame_idx, waveform_bytes) global_offset = 0 for fi, db in enumerate(frames_data): + page_addr = db.data[4:6] if len(db.data) >= 6 else b"" w = db.data[7:] # frame.data[7:] - # A5[0]: waveform begins after the 21-byte STRT record and 6-byte preamble. - # Layout: STRT(21B) + null-pad(2B) + 0xFF sentinel(4B) = 27 bytes total. + # A5[0]: probe response. Two cases: + # - Event 1 (start_offset_in_strt == 0x0000): the bytes after STRT + # are the device's *pre-event reserved area* (flash 0x0046 to + # 0x0600), NOT samples. We must skip them; samples begin at + # the first dedicated chunk frame at counter=0x0600. + # - Event N (continuation, start_offset != 0x0000): the bytes after + # the STRT record ARE the first slice of real samples for the + # event (BW's chunk loop addresses the probe as a sample chunk). if fi == 0: sp = w.find(b"STRT") if sp < 0: continue + if is_event_1: + # No usable samples in the probe — pre-event reserved bytes. + continue + # Layout: STRT(21B) + null-pad(2B) + 0xFF sentinel(4B) = 27 bytes total. wave = w[sp + 27 :] - # Frame 7 carries event-time metadata strings ("Project:", "Client:", …) - # and no waveform ADC data. - elif fi == 7: + # Skip the dedicated metadata pages (event 1 only): page_addr 0x1002 / 0x1004. + elif page_addr in _METADATA_PAGES: + log.debug( + "_decode_a5_waveform: skipping metadata page fi=%d page_addr=%s", + fi, page_addr.hex(), + ) continue - # Terminator frames have page_key=0x0000 and are excluded upstream - # (read_bulk_waveform_stream returns early on page_key==0). - # No hardcoded frame-index skip here — all non-metadata frames are data. + # Sample chunk (or TERM): strip the 8-byte per-frame header. else: - # Strip the 8-byte per-frame header (ctr + 6 zero bytes) if len(w) < 8: continue wave = w[8:] @@ -1576,10 +1685,8 @@ def _decode_a5_waveform( total_bytes = global_offset n_sets = total_bytes // 8 log.debug( - "_decode_a5_waveform: %d chunks, %dB total → %d complete sample-sets " - "(%d of %d expected; %.0f%%)", - len(chunks), total_bytes, n_sets, n_sets, total_samples, - 100.0 * n_sets / total_samples if total_samples else 0, + "_decode_a5_waveform: %d chunks, %dB total → %d complete sample-sets", + len(chunks), total_bytes, n_sets, ) if n_sets == 0: @@ -1637,7 +1744,7 @@ def _decode_a5_waveform( "Tran": tran, "Vert": vert, "Long": long_, - "Mic": mic, + "MicL": mic, } @@ -1685,22 +1792,30 @@ def _detect_record_format(data: bytes) -> Optional[str]: def _extract_record_type(data: bytes) -> Optional[str]: """ - Return a human-readable name for the waveform record format detected - in the first bytes of a 210-byte 0C record. + Return a user-facing name for a waveform record. All three internal + timestamp-header layouts represent the *same* user concept — a + triggered seismic event — so they all surface as just "Waveform". - Maps to the format codes returned by _detect_record_format(): - "single_shot" → "Waveform" - "continuous" → "Waveform (Continuous)" - "short" → "Waveform (Short)" - None → "Unknown(XX.YY.ZZ)" + The internal format code is preserved for parsing logic (timestamp + decoder selection) but doesn't leak into the API / UI / sidecar. + Callers that need the raw layout can call `_detect_record_format` + directly. + + Background: across BE11529 firmware S338.17 we've observed three + different byte layouts for the timestamp header at the start of the + 0C record (8 / 9 / 10 bytes, distinguished by the position of the + BE-encoded year and the presence of `0x10` marker bytes). An older + revision of this code labelled them "Waveform" / "Waveform + (Continuous)" / "Waveform (Short)", which created the false + impression that there were three distinct event "types" the user + could configure. In reality the user only ever picks Single Shot + vs Continuous vs Histogram in the compliance config — the byte + layout is a firmware-internal detail that doesn't always correlate + with that choice. """ fmt = _detect_record_format(data) - if fmt == "single_shot": + if fmt in ("single_shot", "continuous", "short"): return "Waveform" - if fmt == "continuous": - return "Waveform (Continuous)" - if fmt == "short": - return "Waveform (Short)" if len(data) >= 3: log.warning( "_extract_record_type: unrecognized header: data[0:3]=%02X %02X %02X", diff --git a/minimateplus/event_file_io.py b/minimateplus/event_file_io.py new file mode 100644 index 0000000..b1f54ee --- /dev/null +++ b/minimateplus/event_file_io.py @@ -0,0 +1,518 @@ +""" +minimateplus/event_file_io.py — modern event-file (.sfm.json sidecar) IO. + +This module is the single home for event-file conversion code that doesn't +fit cleanly inside `blastware_file.py` (which is the BW binary codec): + + - sidecar JSON read/write (the modern per-event metadata file) + - read_blastware_file() — reverse of write_blastware_file, used by + the BW-importer flow when SFM is ingesting files produced by + Blastware's own ACH (where the source A5 frames aren't available). + +Sidecar schema v1 layout — see docs in the project plan or the schema +declared in `event_to_sidecar_dict()`. +""" + +from __future__ import annotations + +import datetime +import hashlib +import json +import logging +import os +import struct +from pathlib import Path +from typing import Optional, Union + +from .models import Event, PeakValues, ProjectInfo, Timestamp +from . import blastware_file as _bw # avoid circular reference at module load + +log = logging.getLogger(__name__) + +# Schema version for the sidecar JSON. Bump when fields change shape. +# Older readers must reject anything > SCHEMA_VERSION; newer fields added +# inside `extensions` are forward-compatible without a bump. +SCHEMA_VERSION = 1 +SIDECAR_KIND = "sfm.event" + +# Default tool_version stamp; callers can override. Hard-coded here +# rather than read via importlib.metadata because the latter reflects the +# *installed* dist-info, which doesn't update when pyproject.toml is +# bumped without a `pip install` re-run — leading to confusing stale +# version stamps in sidecars. Bump this constant and CHANGELOG.md +# together at release time. +TOOL_VERSION = "0.15.0" + +try: + # Best-effort: prefer the installed metadata when it's NEWER than the + # baked-in constant (e.g. a downstream packager bumped the wheel + # without editing this file). Otherwise fall back to TOOL_VERSION. + from importlib.metadata import version as _pkg_version + _meta_v = _pkg_version("seismo-relay") + def _vtuple(s): + try: + return tuple(int(p) for p in s.split(".")[:3]) + except Exception: + return (0, 0, 0) + _TOOL_VERSION_DEFAULT = ( + _meta_v if _vtuple(_meta_v) > _vtuple(TOOL_VERSION) else TOOL_VERSION + ) +except Exception: + _TOOL_VERSION_DEFAULT = TOOL_VERSION + + +# ── Sidecar dict construction ───────────────────────────────────────────────── + + +def _ts_iso(ts: Optional[Timestamp]) -> Optional[str]: + if ts is None: + return None + try: + return datetime.datetime( + ts.year, ts.month, ts.day, + ts.hour or 0, ts.minute or 0, ts.second or 0, + ).isoformat() + except Exception: + return str(ts) + + +def _peak_values_to_dict(pv: Optional[PeakValues]) -> dict: + if pv is None: + return { + "transverse": None, + "vertical": None, + "longitudinal": None, + "vector_sum": None, + "mic_psi": None, + } + return { + "transverse": pv.tran, + "vertical": pv.vert, + "longitudinal": pv.long, + "vector_sum": pv.peak_vector_sum, + "mic_psi": pv.micl, + } + + +def _project_info_to_dict(pi: Optional[ProjectInfo]) -> dict: + if pi is None: + return { + "project": None, + "client": None, + "operator": None, + "sensor_location": None, + } + return { + "project": pi.project, + "client": pi.client, + "operator": pi.operator, + "sensor_location": pi.sensor_location, + } + + +def event_to_sidecar_dict( + event: Event, + *, + serial: str, + blastware_filename: str, + blastware_filesize: int, + blastware_sha256: str, + source_kind: str = "sfm-live", + a5_pickle_filename: Optional[str] = None, + tool_version: str = _TOOL_VERSION_DEFAULT, + captured_at: Optional[datetime.datetime] = None, + review: Optional[dict] = None, + extensions: Optional[dict] = None, +) -> dict: + """ + Build a v1 sidecar dict from an Event + the surrounding metadata. + + Pure helper — no file I/O. Callers stitch the result into a sidecar + via `write_sidecar()` (or POST it back via the PATCH endpoint). + """ + if source_kind not in {"sfm-live", "sfm-ach", "bw-import"}: + raise ValueError(f"unknown source_kind: {source_kind!r}") + + captured_at = captured_at or datetime.datetime.utcnow() + + return { + "schema_version": SCHEMA_VERSION, + "kind": SIDECAR_KIND, + + "event": { + "serial": serial, + "timestamp": _ts_iso(event.timestamp), + "waveform_key": event._waveform_key.hex() if event._waveform_key else None, + "record_type": event.record_type, + "sample_rate": event.sample_rate, + "rectime_seconds": event.rectime_seconds, + "total_samples": event.total_samples, + "pretrig_samples": event.pretrig_samples, + }, + + "peak_values": _peak_values_to_dict(event.peak_values), + "project_info": _project_info_to_dict(event.project_info), + + "blastware": { + "filename": blastware_filename, + "filesize": blastware_filesize, + "sha256": blastware_sha256, + "available": True, + }, + + "source": { + "kind": source_kind, + "captured_at": captured_at.isoformat() + "Z" if captured_at.tzinfo is None else captured_at.isoformat(), + "tool_version": tool_version, + "a5_pickle_filename": a5_pickle_filename, + }, + + "review": review or { + "false_trigger": False, + "reviewer": None, + "reviewed_at": None, + "notes": "", + }, + + "extensions": extensions or {}, + } + + +# ── Sidecar IO ──────────────────────────────────────────────────────────────── + + +def write_sidecar(path: Union[str, Path], data: dict) -> None: + """ + Atomic write of a sidecar dict to . + + Validates schema_version is supported before writing so we don't + silently drop a future-format sidecar over the wire. + """ + path = Path(path) + sv = data.get("schema_version") + if not isinstance(sv, int) or sv < 1 or sv > SCHEMA_VERSION: + raise ValueError( + f"write_sidecar: unsupported schema_version={sv!r} " + f"(this build supports 1..{SCHEMA_VERSION})" + ) + + tmp = path.with_suffix(path.suffix + ".tmp") + with tmp.open("w", encoding="utf-8") as f: + json.dump(data, f, indent=2, sort_keys=False, default=str) + f.write("\n") + f.flush() + os.fsync(f.fileno()) + os.replace(tmp, path) + + +def read_sidecar(path: Union[str, Path]) -> dict: + """ + Load a sidecar JSON file. + + Raises FileNotFoundError if missing, ValueError on bad shape / + unsupported schema_version. Unknown keys at the top level are + preserved in the returned dict (forward-compat). + """ + path = Path(path) + with path.open("r", encoding="utf-8") as f: + data = json.load(f) + if not isinstance(data, dict): + raise ValueError(f"sidecar at {path}: top-level is not a JSON object") + sv = data.get("schema_version") + if not isinstance(sv, int) or sv < 1: + raise ValueError(f"sidecar at {path}: missing or invalid schema_version") + if sv > SCHEMA_VERSION: + raise ValueError( + f"sidecar at {path}: schema_version={sv} > supported {SCHEMA_VERSION}; " + "upgrade seismo-relay to read this file" + ) + if data.get("kind") != SIDECAR_KIND: + raise ValueError(f"sidecar at {path}: unexpected kind={data.get('kind')!r}") + return data + + +def patch_sidecar( + path: Union[str, Path], + *, + review: Optional[dict] = None, + extensions: Optional[dict] = None, + reviewer_now: bool = True, +) -> dict: + """ + Atomically apply a JSON-merge-patch to a sidecar file's `review` + and/or `extensions` blocks. Other top-level keys are untouched. + + `review_now`: when True (default) and `review` is non-empty, stamps + `review.reviewed_at` with the current UTC time so the review-time is + auditable without the caller having to pass it. + + Returns the new full sidecar dict. + """ + path = Path(path) + data = read_sidecar(path) + + if review: + merged = dict(data.get("review") or {}) + merged.update({k: v for k, v in review.items() if v is not None or k in merged}) + if reviewer_now: + merged["reviewed_at"] = datetime.datetime.utcnow().isoformat() + "Z" + data["review"] = merged + + if extensions: + merged_ext = dict(data.get("extensions") or {}) + merged_ext.update(extensions) + data["extensions"] = merged_ext + + write_sidecar(path, data) + return data + + +def sidecar_path_for(blastware_path: Union[str, Path]) -> Path: + """Convention: .sfm.json sits next to the BW binary.""" + p = Path(blastware_path) + return p.with_name(p.name + ".sfm.json") + + +def file_sha256(path: Union[str, Path], chunk_size: int = 65536) -> str: + """Compute SHA-256 of a file as a hex string.""" + h = hashlib.sha256() + with open(path, "rb") as f: + while True: + chunk = f.read(chunk_size) + if not chunk: + break + h.update(chunk) + return h.hexdigest() + + +# ── Blastware-file reader ───────────────────────────────────────────────────── +# +# Reverse of `blastware_file.write_blastware_file`. Used by the BW-import +# flow to ingest files produced by Blastware's own ACH (where the source +# A5 frames are not available). +# +# File structure (recap): +# [22B header] [21B STRT record] [body bytes] [26B footer] +# +# The body holds: +# - 6B preamble (00 00 ff ff ff ff) immediately after the STRT +# - 4-channel interleaved int16 LE samples +# - Embedded ASCII metadata strings (Project: / Client: / User Name: / +# Seis Loc: / Extended Notes) from the device's session-start config +# +# The 0C waveform record (per-event peaks, project name) is NOT in the +# BW file — those are computed by the device firmware and only carried +# in the live SUB 0C response. read_blastware_file() therefore computes +# peaks from the raw samples assuming Normal-range (10 in/s full-scale) +# geophone sensitivity. Imported events surface that assumption via the +# sidecar's `peak_values.computed_from_samples` flag. + + +# Geophone scale factor, in/s per ADC unit, for Normal range (10 in/s FS). +# Confirmed from CLAUDE.md (geo_hardware_constant = 6.206053 in/s per V, +# ADC full-scale = 1.61133 V Normal range = 10.0 in/s peak; per-count +# resolution ≈ 10.0 / 32768). +_GEO_NORMAL_FS_INS = 10.0 +_GEO_SENSITIVE_FS_INS = 1.250 +_INT16_FS = 32768.0 + +# Microphone scale factor, psi per ADC count. Approximate — exact factor +# depends on the geophone-vs-mic ADC scaling and the firmware reference. +# We mark mic_psi as "computed approximate" in the sidecar. +_MIC_FS_PSI = 0.0125 / _INT16_FS # ~0.5 psi full-scale assumption + + +def _decode_strt(strt: bytes) -> dict: + """ + Decode the 21-byte STRT record from a BW file. + + Returns dict with waveform_key (4B), total_samples, pretrig_samples, + rectime_seconds. Falls back to None on truncated/missing fields. + """ + if len(strt) < 21 or strt[0:4] != b"STRT": + return {} + return { + "waveform_key": strt[6:10].hex(), + "total_samples": struct.unpack_from(">H", strt, 8)[0], + "pretrig_samples": struct.unpack_from(">H", strt, 16)[0], + "rectime_seconds": strt[18], + } + + +def _find_first_string(buf: bytes, label: bytes, max_len: int = 256) -> Optional[str]: + """ + Search `buf` for `label` (e.g. b"Project:") and return the + null-terminated ASCII string that follows, stripped. + """ + pos = buf.find(label) + if pos < 0: + return None + start = pos + len(label) + end = buf.find(b"\x00", start, start + max_len) + if end < 0: + end = start + max_len + text = buf[start:end].decode("ascii", errors="replace").strip() + return text or None + + +def _decode_samples_4ch_int16_le(stream: bytes) -> dict[str, list[int]]: + """ + Decode a 4-channel interleaved int16 LE byte stream into per-channel + lists. Channels are [Tran, Vert, Long, Mic] = [ch0, ch1, ch2, ch3]. + Truncates to a multiple of 8 bytes (one full sample-set). + """ + n_complete = (len(stream) // 8) * 8 + if n_complete == 0: + return {"Tran": [], "Vert": [], "Long": [], "MicL": []} + fmt = "<" + "h" * (n_complete // 2) + flat = list(struct.unpack(fmt, stream[:n_complete])) + return { + "Tran": flat[0::4], + "Vert": flat[1::4], + "Long": flat[2::4], + "MicL": flat[3::4], + } + + +def _peaks_from_samples(samples: dict[str, list[int]]) -> PeakValues: + """ + Compute approximate peaks from raw int16 samples assuming Normal-range + geophone sensitivity. Used by the BW-importer when the 0C waveform + record (the device's authoritative peaks) is unavailable. + """ + def _peak_ins(ch: list[int]) -> float: + if not ch: + return 0.0 + m = max(abs(int(v)) for v in ch) + return m / _INT16_FS * _GEO_NORMAL_FS_INS + + tran = _peak_ins(samples.get("Tran", [])) + vert = _peak_ins(samples.get("Vert", [])) + long_ = _peak_ins(samples.get("Long", [])) + + # Mic in psi (approximate) + mic_ch = samples.get("MicL", []) or [] + mic = max((abs(int(v)) for v in mic_ch), default=0) * _MIC_FS_PSI + + # Peak vector sum: max over time of sqrt(T^2 + V^2 + L^2) + pvs = 0.0 + n = min(len(samples.get("Tran", [])), len(samples.get("Vert", [])), len(samples.get("Long", []))) + if n: + scale = _GEO_NORMAL_FS_INS / _INT16_FS + T = samples["Tran"]; V = samples["Vert"]; L = samples["Long"] + for i in range(n): + t = T[i] * scale + v = V[i] * scale + l = L[i] * scale + mag = (t*t + v*v + l*l) ** 0.5 + if mag > pvs: + pvs = mag + + return PeakValues( + tran=tran, vert=vert, long=long_, + peak_vector_sum=pvs, micl=mic, + ) + + +def read_blastware_file(path: Union[str, Path]) -> Event: + """ + Parse a Blastware waveform file into an Event. + + Recovers: + - waveform_key, rectime_seconds, total_samples, pretrig_samples + (from the STRT record) + - timestamp (from the footer's start-time field) + - project_info (from ASCII labels embedded in the body) + - raw_samples (Tran/Vert/Long/MicL int16 lists) + - peak_values (computed from raw_samples; approximate — see notes + on _peaks_from_samples about Normal-range assumption) + + Does NOT recover the source A5 frames (they aren't in the BW file). + The returned Event has `_a5_frames = None`, signalling that + byte-for-byte regeneration of the BW file from this Event alone is + not possible — the on-disk BW file IS the byte-for-byte source. + """ + path = Path(path) + raw = path.read_bytes() + if len(raw) < _bw._WAVEFORM_HEADER_SIZE + 21 + 26: + raise ValueError(f"{path}: file too short ({len(raw)} bytes) to be a BW event") + + # Header: validate magic prefix. + header = raw[:_bw._WAVEFORM_HEADER_SIZE] + if not header.startswith(_bw._FILE_HEADER_PREFIX): + raise ValueError(f"{path}: not a Blastware file (bad header prefix)") + + # STRT record: 21 bytes immediately after the header. + strt_raw = raw[_bw._WAVEFORM_HEADER_SIZE : _bw._WAVEFORM_HEADER_SIZE + 21] + strt_fields = _decode_strt(strt_raw) + if not strt_fields: + raise ValueError(f"{path}: STRT record missing or malformed") + + # Footer: locate the 0e 08 marker, validating the year is in a sane range. + body_start = _bw._WAVEFORM_HEADER_SIZE + 21 + footer_pos = -1 + pos = body_start + while True: + pos = raw.find(b"\x0e\x08", pos) + if pos < 0 or pos + 26 > len(raw): + break + yr = (raw[pos + 4] << 8) | raw[pos + 5] + if 2015 <= yr <= 2050: + footer_pos = pos + break + pos += 1 + + if footer_pos < 0 and len(raw) >= 26: + footer_pos = len(raw) - 26 + if footer_pos < body_start: + raise ValueError(f"{path}: footer not found") + + body = raw[body_start : footer_pos] + footer = raw[footer_pos : footer_pos + 26] + + # Footer layout: + # [0:2] 0e 08 marker + # [2:10] ts1 (start) BE 8B + # [10:18] ts2 (stop) BE 8B + # [18:24] 00 01 00 02 00 00 + # [24:26] crc + ts1 = _bw._decode_ts_be(footer[2:10]) + ts2 = _bw._decode_ts_be(footer[10:18]) + + # Body: first 6 bytes are the preamble (00 00 ff ff ff ff). Strip + # them before decoding samples. Any trailing tail past the last + # full sample-set is silently truncated by _decode_samples_4ch. + sample_bytes = body[6:] if body[:6].hex() in ("0000ffffffff", "0000FFFFFFFF") else body + samples = _decode_samples_4ch_int16_le(sample_bytes) + + # Metadata strings (label-anchored search across the body). + project = _find_first_string(body, b"Project:") + client = _find_first_string(body, b"Client:") + user = _find_first_string(body, b"User Name:") + seisloc = _find_first_string(body, b"Seis Loc:") + + # Build the Event. + ev = Event(index=-1) + if strt_fields.get("waveform_key"): + ev._waveform_key = bytes.fromhex(strt_fields["waveform_key"]) + ev.record_type = "Waveform" + ev.rectime_seconds = strt_fields.get("rectime_seconds") + ev.total_samples = strt_fields.get("total_samples") + ev.pretrig_samples = strt_fields.get("pretrig_samples") + + if ts1 is not None: + ev.timestamp = Timestamp( + raw=footer[2:10], + flag=0x10, + year=ts1.year, unknown_byte=0, month=ts1.month, day=ts1.day, + hour=ts1.hour, minute=ts1.minute, second=ts1.second, + ) + + ev.project_info = ProjectInfo( + project=project, client=client, operator=user, sensor_location=seisloc, + ) + ev.raw_samples = samples + ev.peak_values = _peaks_from_samples(samples) + ev._a5_frames = None # not recoverable from BW file + + return ev diff --git a/pyproject.toml b/pyproject.toml index 8b9e8ec..5286aa6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta" [project] name = "seismo-relay" -version = "0.12.0" +version = "0.15.0" description = "Python client and REST server for MiniMate Plus seismographs" requires-python = ">=3.10" dependencies = [ @@ -12,6 +12,9 @@ dependencies = [ "uvicorn[standard]>=0.24", "pyserial>=3.5", "sqlalchemy>=2.0", + "python-multipart>=0.0.7", + "h5py>=3.10", + "numpy>=1.24", ] [tool.setuptools.packages.find] diff --git a/requirements.txt b/requirements.txt index 0958f1a..8b01960 100644 --- a/requirements.txt +++ b/requirements.txt @@ -2,3 +2,6 @@ fastapi uvicorn sqlalchemy pyserial +python-multipart +h5py +numpy diff --git a/scripts/backfill_sidecars.py b/scripts/backfill_sidecars.py new file mode 100644 index 0000000..6b7cb82 --- /dev/null +++ b/scripts/backfill_sidecars.py @@ -0,0 +1,346 @@ +""" +scripts/backfill_sidecars.py — generate .sfm.json sidecars AND .h5 +clean-waveform files for existing events already in the waveform store +that predate those features. + +Walks `//` and for each BW event file: + + Sidecar (.sfm.json): + - Skip when an existing sidecar's blastware.sha256 matches the + current BW file's sha256. + - Else regenerate: prefer .a5.pkl (full fidelity); fall back to + parsing the BW binary directly (peaks computed from samples). + + Clean waveform (.h5): + - Skip when .h5 already exists (idempotent). + - Else write from .a5.pkl (preferred) or BW binary parse (fallback). + +Usage: + python scripts/backfill_sidecars.py [--store-root PATH] + [--db-path PATH] + [--dry-run] + [--skip-hdf5] + [-v] +""" + +from __future__ import annotations + +import argparse +import logging +import sys +from pathlib import Path + +# Allow running from the repo root without installation. +sys.path.insert(0, str(Path(__file__).resolve().parent.parent)) + +from minimateplus import event_file_io +from sfm import event_hdf5 +from sfm.waveform_store import WaveformStore, _frame_to_dict, _dict_to_frame # noqa: F401 +from sfm.database import SeismoDb + +log = logging.getLogger("backfill_sidecars") + + +def _looks_like_event_file(path: Path) -> bool: + """Same heuristic as the importer CLI.""" + if not path.is_file(): + return False + if path.name.endswith((".a5.pkl", ".sfm.json")): + return False + ext = path.suffix.lstrip(".") + if not (3 <= len(ext) <= 4): + return False + if not (ext[-1].upper() in {"W", "H"} or ext.endswith("0")): + return False + try: + return path.stat().st_size >= 70 + except OSError: + return False + + +def main(argv=None) -> int: + p = argparse.ArgumentParser(description=__doc__) + p.add_argument( + "--db-path", + default=str(Path(__file__).resolve().parent.parent / "bridges" / "captures" / "seismo_relay.db"), + ) + p.add_argument("--store-root", default=None) + p.add_argument("--dry-run", action="store_true") + p.add_argument( + "--skip-hdf5", action="store_true", + help="Don't generate .h5 clean-waveform files (only sidecars).", + ) + p.add_argument( + "--force", action="store_true", + help=( + "Regenerate sidecars + .h5 even when an existing sidecar's " + "blastware.sha256 matches the current BW file. Use this after " + "upgrading seismo-relay to pull in decoder bug fixes (e.g. the " + "STRT-rectime byte-offset fix in v0.15.x)." + ), + ) + p.add_argument("-v", "--verbose", action="store_true") + args = p.parse_args(argv) + + logging.basicConfig( + level=logging.DEBUG if args.verbose else logging.INFO, + format="%(asctime)s %(levelname)-7s %(name)s %(message)s", + datefmt="%H:%M:%S", + ) + + db_path = Path(args.db_path).expanduser().resolve() + store_root = ( + Path(args.store_root).expanduser().resolve() + if args.store_root else db_path.parent / "waveforms" + ) + if not store_root.exists(): + print(f"error: store root does not exist: {store_root}", file=sys.stderr) + return 2 + + store = WaveformStore(store_root) + db = SeismoDb(db_path) + + written = skipped = errors = 0 + for serial_dir in sorted(p for p in store_root.iterdir() if p.is_dir()): + serial = serial_dir.name + for path in sorted(serial_dir.iterdir()): + if not _looks_like_event_file(path): + continue + sidecar_path = store.sidecar_path_for(serial, path.name) + try: + bw_sha = event_file_io.file_sha256(path) + except Exception as exc: + log.error("sha256 failed for %s: %s", path, exc) + errors += 1 + continue + + # Skip when an up-to-date sidecar already exists. + # + # Two-part freshness check: + # 1. blastware.sha256 must match the current BW file (proves + # the sidecar describes THIS file). + # 2. source.tool_version must be ≥ current TOOL_VERSION (proves + # the sidecar was written by a build that includes any + # decoder fixes shipped since). + # Either part failing → regenerate. --force bypasses both. + if sidecar_path.exists() and not args.force: + try: + existing = event_file_io.read_sidecar(sidecar_path) + sha_ok = existing.get("blastware", {}).get("sha256") == bw_sha + src_ver = existing.get("source", {}).get("tool_version", "") + def _vt(s): + try: + return tuple(int(p) for p in str(s).split(".")[:3]) + except Exception: + return (0, 0, 0) + ver_ok = _vt(src_ver) >= _vt(event_file_io.TOOL_VERSION) + if sha_ok and ver_ok: + skipped += 1 + continue + if sha_ok and not ver_ok: + log.info( + "regenerating %s (sidecar tool_version=%s < current %s)", + sidecar_path.name, src_ver or "(none)", + event_file_io.TOOL_VERSION, + ) + except Exception: + pass # fall through to rewrite + + # Decide path: A5-based (high-fidelity) or BW-only. + a5_path = serial_dir / f"{path.name}.a5.pkl" + try: + if a5_path.exists(): + frames = store.load_a5(serial, path.name) + if not frames: + raise RuntimeError("a5_pickle present but unreadable") + # Build an Event by replaying the A5 decoders. Note: + # the .a5.pkl alone CANNOT recover timestamp / + # record_type / waveform_key / per-channel peaks — + # those live in the 0C record, which isn't saved + # separately. We seed those from the DB row + the + # existing sidecar below so a re-backfill doesn't + # nuke fields the original save populated. + from minimateplus.client import ( + _decode_a5_metadata_into, + _decode_a5_waveform, + ) + from minimateplus.models import Event, PeakValues, ProjectInfo, Timestamp + ev = Event(index=-1) + _decode_a5_metadata_into(frames, ev) + _decode_a5_waveform(frames, ev) + source_kind = "sfm-live" + a5_filename = a5_path.name + else: + ev = event_file_io.read_blastware_file(path) + source_kind = "bw-import" + a5_filename = None + from minimateplus.models import Event, PeakValues, ProjectInfo, Timestamp + + # ── Seed missing fields from the SeismoDb events row ── + # The DB row was populated at original save time with peaks, + # project info, timestamp, record_type, sample_rate, etc. + # All of those survive intact in SQLite; pull them onto the + # rebuilt Event so the regenerated sidecar matches what was + # there before the backfill ran. + db_row = None + try: + import sqlite3 as _sql + with _sql.connect(str(db.db_path)) as _conn: + _conn.row_factory = _sql.Row + db_row = _conn.execute( + "SELECT * FROM events " + "WHERE serial=? AND blastware_filename=? " + "LIMIT 1", + (serial, path.name), + ).fetchone() + except Exception as exc: + log.debug("DB lookup failed for %s: %s", path.name, exc) + + if db_row is not None: + if ev.sample_rate is None and db_row["sample_rate"]: + ev.sample_rate = int(db_row["sample_rate"]) + if not ev.record_type and db_row["record_type"]: + ev.record_type = db_row["record_type"] + if ev._waveform_key is None and db_row["waveform_key"]: + try: + ev._waveform_key = bytes.fromhex(db_row["waveform_key"]) + except Exception: + pass + # Timestamp from the ISO-8601 string in the DB row. + if ev.timestamp is None and db_row["timestamp"]: + try: + import datetime as _dt + _t = _dt.datetime.fromisoformat(db_row["timestamp"]) + ev.timestamp = Timestamp( + raw=b"", flag=0x10, + year=_t.year, unknown_byte=0, + month=_t.month, day=_t.day, + hour=_t.hour, minute=_t.minute, second=_t.second, + ) + except Exception: + pass + # Peaks from the DB row when the A5 decode didn't supply them. + if ev.peak_values is None: + ev.peak_values = PeakValues( + tran=db_row["tran_ppv"], + vert=db_row["vert_ppv"], + long=db_row["long_ppv"], + peak_vector_sum=db_row["peak_vector_sum"], + micl=db_row["mic_ppv"], + ) + # Project info from the DB row when the A5 metadata-page + # decode didn't pick it up. + if ev.project_info is None or all( + v in (None, "") + for v in ( + (ev.project_info.project if ev.project_info else None), + (ev.project_info.client if ev.project_info else None), + (ev.project_info.operator if ev.project_info else None), + (ev.project_info.sensor_location if ev.project_info else None), + ) + ): + ev.project_info = ProjectInfo( + project=db_row["project"], + client=db_row["client"], + operator=db_row["operator"], + sensor_location=db_row["sensor_location"], + ) + + # Derive total_samples when we have both rectime + sample_rate. + # The decoder's STRT-derived value can be a buffer offset + # rather than a sample count — drop it in that case. + if ev.sample_rate and ev.rectime_seconds: + derived = int(round(ev.sample_rate * ev.rectime_seconds)) + if (ev.total_samples is None + or ev.total_samples > derived * 2 + or ev.total_samples < derived // 4): + ev.total_samples = derived + + # Preserve user-edited review state + extensions from the + # existing sidecar (false_trigger flag, notes, etc.) so a + # backfill never wipes them out. + preserved_review = None + preserved_ext = None + if sidecar_path.exists(): + try: + _existing = event_file_io.read_sidecar(sidecar_path) + preserved_review = _existing.get("review") + preserved_ext = _existing.get("extensions") + except Exception: + pass + + sidecar = event_file_io.event_to_sidecar_dict( + ev, + serial=serial, + blastware_filename=path.name, + blastware_filesize=path.stat().st_size, + blastware_sha256=bw_sha, + source_kind=source_kind, + a5_pickle_filename=a5_filename, + review=preserved_review, + extensions=preserved_ext, + ) + + # Also emit the .h5 clean-waveform file when missing OR when + # --force was passed (so a re-backfill picks up decoder fixes). + hdf5_path = store.hdf5_path_for(serial, path.name) + hdf5_filename = hdf5_path.name if hdf5_path.exists() else None + hdf5_action = "kept" + need_h5 = not args.skip_hdf5 and (args.force or not hdf5_path.exists()) + if need_h5: + if args.dry_run: + hdf5_action = "would (re)write" + else: + try: + event_hdf5.write_event_hdf5( + hdf5_path, ev, + serial=serial, + geo_range="normal", + source_kind=source_kind, + ) + hdf5_filename = hdf5_path.name + hdf5_action = "rewrote" if hdf5_path.exists() else "wrote" + except Exception as exc: + log.warning("HDF5 write failed for %s: %s", path.name, exc) + hdf5_action = "FAILED" + + if args.dry_run: + print(f" [DRY ] would write {sidecar_path.name} " + f"+ .h5 ({hdf5_action}) source={source_kind}") + written += 1 + continue + + event_file_io.write_sidecar(sidecar_path, sidecar) + + # Best-effort: keep the SQL row's sidecar_filename in sync + # by upserting via insert_events (it dedups on serial+ts). + try: + db.insert_events( + [ev], serial=serial, + waveform_records=( + {ev._waveform_key.hex(): { + "filename": path.name, + "filesize": path.stat().st_size, + "a5_pickle_filename": a5_filename, + "sidecar_filename": sidecar_path.name, + }} + if ev._waveform_key else None + ), + ) + except Exception as exc: + log.warning("DB upsert failed for %s: %s", path.name, exc) + + print(f" [OK ] {path.name} → {sidecar_path.name} " + f"+ h5 ({hdf5_action}) source={source_kind}") + written += 1 + + except Exception as exc: + log.error("backfill failed for %s: %s", path, exc, exc_info=args.verbose) + errors += 1 + + print(f"\nDone. written={written} skipped(uptodate)={skipped} errors={errors}") + return 0 if errors == 0 else 1 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/sfm/cache.py b/sfm/cache.py index be35e60..5505bc8 100644 --- a/sfm/cache.py +++ b/sfm/cache.py @@ -83,13 +83,24 @@ class CachedEvent(Base): Events are immutable once recorded on the device; once we have an event in the cache it never needs to be re-downloaded unless explicitly requested. + + The two extra columns `waveform_key` and `event_timestamp` are an + integrity stamp: when set_event() / set_waveform() are called with a + different (waveform_key, event_timestamp) for the same (conn_key, index), + we know the device was erased and re-recorded — the cached row no longer + refers to the same physical event and the entire device's cache is + flushed before the new entry is written. This catches the post-erase + key-reuse bug where the device's first new event (key 01110000) collides + with the first event we previously downloaded. """ __tablename__ = "cached_events" - conn_key = sa.Column(sa.String, primary_key=True) - index = sa.Column(sa.Integer, primary_key=True) - event_json = sa.Column(sa.Text, nullable=False) # serialised Event dict - cached_at = sa.Column(sa.Float, nullable=False) # Unix timestamp + conn_key = sa.Column(sa.String, primary_key=True) + index = sa.Column(sa.Integer, primary_key=True) + event_json = sa.Column(sa.Text, nullable=False) # serialised Event dict + cached_at = sa.Column(sa.Float, nullable=False) # Unix timestamp + waveform_key = sa.Column(sa.String, nullable=True) # 8-hex device key + event_timestamp = sa.Column(sa.String, nullable=True) # ISO-8601 from 0C class CachedWaveform(Base): @@ -97,14 +108,18 @@ class CachedWaveform(Base): Full raw ADC waveform for a single event (SUB 5A full download). These are large (up to several MB) and expensive to fetch over cellular. - Once downloaded they are immutable and cached permanently. + Once downloaded they are immutable and cached permanently — but the + cache row is invalidated when the device is erased and a new event lands + at the same index (see CachedEvent docstring). """ __tablename__ = "cached_waveforms" - conn_key = sa.Column(sa.String, primary_key=True) - index = sa.Column(sa.Integer, primary_key=True) - waveform_json = sa.Column(sa.Text, nullable=False) # full /device/event/{idx}/waveform response JSON - cached_at = sa.Column(sa.Float, nullable=False) + conn_key = sa.Column(sa.String, primary_key=True) + index = sa.Column(sa.Integer, primary_key=True) + waveform_json = sa.Column(sa.Text, nullable=False) # full /device/event/{idx}/waveform response JSON + cached_at = sa.Column(sa.Float, nullable=False) + waveform_key = sa.Column(sa.String, nullable=True) # 8-hex device key + event_timestamp = sa.Column(sa.String, nullable=True) # ISO-8601 from 0C class CachedMonitorStatus(Base): @@ -149,6 +164,23 @@ class SFMCache: engine = sa.create_engine(url, connect_args={"check_same_thread": False}) Base.metadata.create_all(engine) self._Session = orm.sessionmaker(bind=engine) + # In-place schema migration: add the (waveform_key, event_timestamp) + # integrity-stamp columns to legacy cache DBs that predate the + # post-erase eviction logic. ALTER TABLE ADD COLUMN is idempotent + # via the column-presence check below. + with engine.begin() as conn: + for table in ("cached_events", "cached_waveforms"): + cols = { + r[1] + for r in conn.exec_driver_sql(f"PRAGMA table_info({table})").fetchall() + } + for new_col, ddl in ( + ("waveform_key", "TEXT"), + ("event_timestamp", "TEXT"), + ): + if new_col not in cols: + log.info("cache schema: %s ADD COLUMN %s %s", table, new_col, ddl) + conn.exec_driver_sql(f"ALTER TABLE {table} ADD COLUMN {new_col} {ddl}") log.info("SFM cache opened: %s", db_path) # ── Connection key ──────────────────────────────────────────────────────── @@ -242,15 +274,91 @@ class SFMCache: row = s.get(CachedEvent, (conn_key, index)) return json.loads(row.event_json) if row else None + @staticmethod + def _event_signature(ev: dict) -> tuple[Optional[str], Optional[str]]: + """ + Extract the (waveform_key_hex, timestamp_iso) integrity stamp from + a serialised event dict. Either field may be None if the source + Event was missing it; the comparison logic in set_events/set_waveform + treats "both sides have a value AND they differ" as the only + eviction trigger, so partial data never spuriously flushes cache. + """ + key = ev.get("waveform_key") or ev.get("_waveform_key") + if isinstance(key, (bytes, bytearray)): + key = bytes(key).hex() + ts = ev.get("timestamp") + if isinstance(ts, dict): + # _serialise_timestamp returns a dict like {"iso": "...", ...} + ts = ts.get("iso") or ts.get("string") or None + return (key if isinstance(key, str) else None, + ts if isinstance(ts, str) else None) + + def _maybe_flush_on_mismatch( + self, + s, + conn_key: str, + index: int, + new_key: Optional[str], + new_ts: Optional[str], + ) -> bool: + """ + Check whether the cached entry at (conn_key, index) has a different + (waveform_key, timestamp) than the incoming one. If so, treat it as + a post-erase key-reuse signal and flush ALL cached events/waveforms + for this device, then return True. + Returns False when no flush was needed. + """ + if not new_key and not new_ts: + return False # nothing to compare against + existing = s.get(CachedEvent, (conn_key, index)) + if existing is None: + existing = s.get(CachedWaveform, (conn_key, index)) + if existing is None: + return False + old_key = existing.waveform_key + old_ts = existing.event_timestamp + # Only flush when both sides have populated values and they differ. + differs = ( + (new_key and old_key and new_key != old_key) + or (new_ts and old_ts and new_ts != old_ts) + ) + if not differs: + return False + log.warning( + "cache: device %s — index %d (key=%s, ts=%s) replaces (key=%s, ts=%s); " + "flushing all cached events/waveforms for this device " + "(post-erase key reuse detected)", + conn_key, index, new_key, new_ts, old_key, old_ts, + ) + s.query(CachedEvent).filter_by(conn_key=conn_key).delete() + s.query(CachedWaveform).filter_by(conn_key=conn_key).delete() + return True + def set_events(self, conn_key: str, events: list[dict]) -> None: """ Upsert a list of event dicts. Existing rows are updated; new rows are inserted. This is used to add newly-discovered events to the cache. + + Eviction: if any incoming event has a different (waveform_key, + timestamp) than the row currently cached at the same index, we flush + the entire device's cache before inserting the new entries. Catches + post-erase key reuse where index 0 silently switches identity. """ now = time.time() with self._Session() as s: + # Eviction check: scan incoming events for any (index, key, ts) + # that conflicts with a cached row. A single conflict triggers + # a full device-wide flush so we don't end up with a mixed-era + # cache. + for ev in events: + key, ts = self._event_signature(ev) + if self._maybe_flush_on_mismatch(s, conn_key, ev["index"], key, ts): + s.commit() + break # cache is now empty for this device; carry on + for ev in events: idx = ev["index"] + key, ts = self._event_signature(ev) row = s.get(CachedEvent, (conn_key, idx)) if row is None: row = CachedEvent( @@ -258,12 +366,18 @@ class SFMCache: index=idx, event_json=json.dumps(ev), cached_at=now, + waveform_key=key, + event_timestamp=ts, ) s.add(row) log.debug("cached new event %d for %s", idx, conn_key) else: # Refresh in case project_info was backfilled after initial store row.event_json = json.dumps(ev) + if key: + row.waveform_key = key + if ts: + row.event_timestamp = ts s.commit() # ── Waveforms ───────────────────────────────────────────────────────────── @@ -278,8 +392,16 @@ class SFMCache: return json.loads(row.waveform_json) def set_waveform(self, conn_key: str, index: int, waveform: dict) -> None: - """Store a full waveform response dict permanently.""" + """ + Store a full waveform response dict permanently. + + Like set_events, this checks the (waveform_key, timestamp) signature + of the incoming entry against what's currently cached at the same + index. A mismatch flushes the entire device's cache before insert. + """ + key, ts = self._event_signature(waveform) with self._Session() as s: + self._maybe_flush_on_mismatch(s, conn_key, index, key, ts) row = s.get(CachedWaveform, (conn_key, index)) if row is None: row = CachedWaveform( @@ -287,13 +409,20 @@ class SFMCache: index=index, waveform_json=json.dumps(waveform), cached_at=time.time(), + waveform_key=key, + event_timestamp=ts, ) s.add(row) else: row.waveform_json = json.dumps(waveform) row.cached_at = time.time() + if key: + row.waveform_key = key + if ts: + row.event_timestamp = ts s.commit() - log.debug("cached waveform for %s event %d", conn_key, index) + log.debug("cached waveform for %s event %d (key=%s, ts=%s)", + conn_key, index, key, ts) # ── Monitor status ──────────────────────────────────────────────────────── diff --git a/sfm/database.py b/sfm/database.py index 110ba7a..8c492f5 100644 --- a/sfm/database.py +++ b/sfm/database.py @@ -81,6 +81,10 @@ CREATE TABLE IF NOT EXISTS events ( sample_rate INTEGER, record_type TEXT, -- "single_shot" | "continuous" false_trigger INTEGER NOT NULL DEFAULT 0, -- 0=no, 1=yes (manual flag) + blastware_filename TEXT, -- event file within waveform store; extension is per-event (AB0T encodes timestamp) + blastware_filesize INTEGER, -- bytes; NULL if no event file saved + a5_pickle_filename TEXT, -- ".a5.pkl" sidecar + sidecar_filename TEXT, -- ".sfm.json" review/metadata sidecar created_at TEXT NOT NULL DEFAULT (strftime('%Y-%m-%dT%H:%M:%SZ', 'now')), UNIQUE(serial, timestamp) ); @@ -184,6 +188,21 @@ class SeismoDb: """) log.info("_migrate: events table rebuilt OK") + # Migration 1b: add Blastware-file columns to existing events tables. + # New columns are NULLable so old rows just read NULL. + existing_cols = { + r[1] for r in conn.execute("PRAGMA table_info(events)").fetchall() + } + for col, ddl in ( + ("blastware_filename", "TEXT"), + ("blastware_filesize", "INTEGER"), + ("a5_pickle_filename", "TEXT"), + ("sidecar_filename", "TEXT"), + ): + if col not in existing_cols: + log.info("_migrate: events ADD COLUMN %s %s", col, ddl) + conn.execute(f"ALTER TABLE events ADD COLUMN {col} {ddl}") + # Migration 2: change monitor_log UNIQUE from (serial, waveform_key) to # (serial, start_time) — same reasoning as events. row = conn.execute( @@ -282,12 +301,24 @@ class SeismoDb: *, serial: str, session_id: Optional[str] = None, + waveform_records: Optional[dict[str, dict]] = None, ) -> tuple[int, int]: """ Insert triggered events. Silently skips duplicates (serial+timestamp). Returns (inserted, skipped). + + ``waveform_records`` (optional): dict keyed by event waveform_key (hex) + whose value is a record from ``WaveformStore.save()``: + {"filename": str, "filesize": int, "a5_pickle_filename": str} + + For events whose key is in this dict, the matching columns are + populated. If a row with the same (serial, timestamp) already exists + (dedup hit), the matching waveform record is upserted onto the + existing row so a re-download via the live endpoint refreshes the + file metadata. """ inserted = skipped = 0 + wave_recs = waveform_records or {} with self._connect() as conn: for ev in events: key = ev._waveform_key.hex() if ev._waveform_key else None @@ -307,6 +338,7 @@ class SeismoDb: pv = ev.peak_values pi = ev.project_info + rec = wave_recs.get(key) or {} try: conn.execute( @@ -315,8 +347,10 @@ class SeismoDb: (id, serial, waveform_key, session_id, timestamp, tran_ppv, vert_ppv, long_ppv, peak_vector_sum, mic_ppv, project, client, operator, sensor_location, - sample_rate, record_type) - VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?) + sample_rate, record_type, + blastware_filename, blastware_filesize, + a5_pickle_filename, sidecar_filename) + VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?) """, ( self._new_id(), serial, key, session_id, ts, @@ -331,16 +365,50 @@ class SeismoDb: pi.sensor_location if pi else None, ev.sample_rate, ev.record_type, + rec.get("filename"), + rec.get("filesize"), + rec.get("a5_pickle_filename"), + rec.get("sidecar_filename"), ), ) inserted += 1 except sqlite3.IntegrityError: skipped += 1 + # Upsert waveform fields onto the existing dedup row so a + # re-download via the live endpoint refreshes filename / + # size / sidecar without churning the rest of the row. + if rec and ts: + conn.execute( + """ + UPDATE events + SET blastware_filename = ?, + blastware_filesize = ?, + a5_pickle_filename = ?, + sidecar_filename = ? + WHERE serial = ? AND timestamp = ? + """, + ( + rec.get("filename"), + rec.get("filesize"), + rec.get("a5_pickle_filename"), + rec.get("sidecar_filename"), + serial, + ts, + ), + ) log.debug("insert_events serial=%s inserted=%d skipped=%d", serial, inserted, skipped) return inserted, skipped + def get_event(self, event_id: str) -> Optional[dict]: + """Return one event row by id, or None.""" + with self._connect() as conn: + row = conn.execute( + "SELECT * FROM events WHERE id = ?", (event_id,), + ).fetchone() + return dict(row) if row else None + def query_events( self, serial: Optional[str] = None, @@ -387,6 +455,36 @@ class SeismoDb: ) return cur.rowcount > 0 + def update_event_review(self, event_id: str, review: dict) -> bool: + """ + Sync derived index columns from a sidecar's `review` block. + + Currently the only derived index is `events.false_trigger` — kept + in sync so `/db/events?false_trigger=true` queries don't have to + scan every sidecar JSON on disk. The sidecar JSON itself remains + the source of truth for the full review state. + + Returns True when the row exists, False otherwise. No-op fields + (review without `false_trigger`) leave the column untouched. + """ + if not isinstance(review, dict): + return False + if "false_trigger" not in review: + # Nothing derived to update; just confirm the row exists. + with self._connect() as conn: + row = conn.execute( + "SELECT 1 FROM events WHERE id=?", (event_id,), + ).fetchone() + return row is not None + + flag = 1 if review.get("false_trigger") else 0 + with self._connect() as conn: + cur = conn.execute( + "UPDATE events SET false_trigger=? WHERE id=?", + (flag, event_id), + ) + return cur.rowcount > 0 + # ── Monitor log ─────────────────────────────────────────────────────────── def insert_monitor_log( diff --git a/sfm/event_hdf5.py b/sfm/event_hdf5.py new file mode 100644 index 0000000..aa6e6f0 --- /dev/null +++ b/sfm/event_hdf5.py @@ -0,0 +1,530 @@ +""" +sfm/event_hdf5.py — HDF5 codec for the canonical "clean waveform" file. + +Layout written to `.h5`: + + / + ├─ samples/ + │ ├─ Tran (float32, in/s) shape: (N,) + │ ├─ Vert (float32, in/s) shape: (N,) + │ ├─ Long (float32, in/s) shape: (N,) + │ └─ MicL (float32, psi) shape: (N,) + ├─ samples_int16/ (optional) + │ ├─ Tran (int16, raw ADC counts) shape: (N,) + │ └─ ... per channel (only when present in the source) + └─ root attrs (event metadata): + schema_version int = 1 + kind str = "sfm.event.hdf5" + serial str + waveform_key str (8-hex) + timestamp str (ISO-8601) + record_type str + sample_rate int (sps) + pretrig_samples int + total_samples int + rectime_seconds float + geo_range str "normal" | "sensitive" + geo_full_scale_ips float (10.0 or 1.250) + project str + client str + operator str + sensor_location str + peak_tran_ips float (from 0C; authoritative) + peak_vert_ips float + peak_long_ips float + peak_pvs_ips float + peak_mic_psi float + tool_version str + captured_at str (ISO-8601 UTC) + source_kind str "sfm-live" | "sfm-ach" | "bw-import" + +Why HDF5 and not just JSON for the canonical clean format: + - Native float32 arrays (no base64 dance, no per-value JSON parsing). + - Per-dataset gzip compression — sample arrays compress 3-5×. + - Cross-language: h5py (Python), HDF5.jl (Julia), io.netcdf (R), etc. + Analysis pipelines don't have to know anything about Blastware. + - Self-describing via attributes; future fields don't break readers. + +The plot-ready `sfm.plot.v1` JSON returned by the REST endpoints is +derived from this HDF5 (or computed on-the-fly when no .h5 exists yet). +""" + +from __future__ import annotations + +import datetime +import logging +from pathlib import Path +from typing import Optional, Union + +import h5py +import numpy as np + +from minimateplus.event_file_io import TOOL_VERSION as _DEFAULT_TOOL_VERSION +from minimateplus.models import Event + +log = logging.getLogger(__name__) + +SCHEMA_VERSION = 1 +HDF5_KIND = "sfm.event.hdf5" + +# Geophone full-scale velocity per range (in/s). Confirmed in CLAUDE.md +# from 4-20-26 captures: Normal=0x00 → 10 in/s, Sensitive=0x01 → 1.25 in/s. +_GEO_FS_BY_RANGE = { + "normal": 10.000, + "sensitive": 1.2500, + 0: 10.000, + 1: 1.2500, +} +_INT16_FS = 32768.0 + +# Default mic conversion: ADC count → psi. Approximate; exact factor +# depends on firmware reference voltage and mic sensitivity, neither of +# which is independently confirmed. We try to refine it from the device- +# reported peak when available (peak_mic_psi / max_abs_int16). +_MIC_DEFAULT_FS_PSI = 0.0125 # ≈ 0.5 psi at full scale (rough) + + +def _resolve_geo_full_scale(geo_range) -> float: + """Map a geo_range value (string or int from compliance config) to the + full-scale velocity in in/s. Defaults to Normal range (10.0) when the + value is unknown — same default as Blastware itself.""" + if geo_range is None: + return _GEO_FS_BY_RANGE["normal"] + if isinstance(geo_range, str): + return _GEO_FS_BY_RANGE.get(geo_range.lower(), _GEO_FS_BY_RANGE["normal"]) + return _GEO_FS_BY_RANGE.get(int(geo_range), _GEO_FS_BY_RANGE["normal"]) + + +def _normalise_range(geo_range) -> str: + """Return 'normal' or 'sensitive' (string) regardless of input form.""" + if isinstance(geo_range, str): + v = geo_range.lower() + if v in ("normal", "sensitive"): + return v + return "normal" + if geo_range == 1: + return "sensitive" + return "normal" + + +def _ts_iso(ts) -> str: + if ts is None: + return "" + try: + return datetime.datetime( + ts.year, ts.month, ts.day, + ts.hour or 0, ts.minute or 0, ts.second or 0, + ).isoformat() + except Exception: + return str(ts) + + +def _samples_to_float( + samples_int16: list[int], + full_scale: float, +) -> np.ndarray: + """Convert int16 ADC counts → float32 physical units. + + Uses _INT16_FS=32768 (not 32767) so that a count of -32768 maps to + exactly -full_scale and +32767 maps to ~+full_scale * 32767/32768. + Matches the device firmware's documented mapping (see CLAUDE.md + geo_hardware_constant rationale). + """ + if not samples_int16: + return np.array([], dtype=np.float32) + arr = np.asarray(samples_int16, dtype=np.int32) # int32 to avoid overflow during scale + return (arr.astype(np.float32) * (full_scale / _INT16_FS)).astype(np.float32) + + +def _mic_scale_factor( + samples_int16: list[int], + peak_mic_psi: Optional[float], +) -> float: + """Resolve the per-count psi factor for the microphone channel. + + When the device reports a peak mic value via the 0C record, we + back-solve the per-count factor from `peak_psi / max(|samples|)` so + the plotted waveform peaks land exactly at the device-reported value. + Otherwise fall back to the rough _MIC_DEFAULT_FS_PSI estimate. + """ + if peak_mic_psi is not None and peak_mic_psi > 0 and samples_int16: + max_count = max(abs(int(v)) for v in samples_int16) or 1 + return float(peak_mic_psi) / float(max_count) + return _MIC_DEFAULT_FS_PSI / _INT16_FS + + +def write_event_hdf5( + path: Union[str, Path], + event: Event, + *, + serial: str, + geo_range = "normal", + source_kind: str = "sfm-live", + tool_version: Optional[str] = None, + captured_at: Optional[datetime.datetime] = None, + include_int16: bool = True, +) -> dict: + """ + Persist a decoded Event as an HDF5 file with samples in physical units. + + Returns a small summary dict suitable for logging: + {"path": Path, "n_samples": int, "geo_full_scale_ips": float} + """ + path = Path(path) + raw = event.raw_samples or {} + pv = event.peak_values + pi = event.project_info + + geo_fs = _resolve_geo_full_scale(geo_range) + geo_range_str = _normalise_range(geo_range) + captured_at = captured_at or datetime.datetime.utcnow() + tool_version = tool_version or _DEFAULT_TOOL_VERSION + + # Per-channel float32 arrays in physical units. + geo_arrays = {} + for ch in ("Tran", "Vert", "Long"): + geo_arrays[ch] = _samples_to_float(raw.get(ch, []), geo_fs) + + # Mic channel — the per-count factor is resolved from the device-reported + # peak when available so the plot peaks the BW value exactly. + mic_int16 = raw.get("MicL", []) + mic_factor = _mic_scale_factor( + mic_int16, + getattr(pv, "micl", None) if pv else None, + ) + if mic_int16: + mic_arr = (np.asarray(mic_int16, dtype=np.int32).astype(np.float32) * mic_factor).astype(np.float32) + else: + mic_arr = np.array([], dtype=np.float32) + + n_samples = max( + (len(geo_arrays[ch]) for ch in geo_arrays), + default=0, + ) + + # Atomic write: temp file + os.replace. + tmp = path.with_suffix(path.suffix + ".tmp") + with h5py.File(tmp, "w") as f: + # Root attrs — event-level metadata. + attrs = f.attrs + attrs["schema_version"] = SCHEMA_VERSION + attrs["kind"] = HDF5_KIND + attrs["serial"] = serial or "" + attrs["waveform_key"] = event._waveform_key.hex() if event._waveform_key else "" + attrs["timestamp"] = _ts_iso(event.timestamp) + attrs["record_type"] = event.record_type or "" + attrs["sample_rate"] = int(event.sample_rate or 0) + attrs["pretrig_samples"] = int(event.pretrig_samples or 0) + attrs["total_samples"] = int(event.total_samples or n_samples) + attrs["rectime_seconds"] = float(event.rectime_seconds or 0.0) + attrs["geo_range"] = geo_range_str + attrs["geo_full_scale_ips"] = float(geo_fs) + attrs["project"] = (pi.project if pi else "") or "" + attrs["client"] = (pi.client if pi else "") or "" + attrs["operator"] = (pi.operator if pi else "") or "" + attrs["sensor_location"] = (pi.sensor_location if pi else "") or "" + attrs["peak_tran_ips"] = float(pv.tran if pv and pv.tran is not None else 0.0) + attrs["peak_vert_ips"] = float(pv.vert if pv and pv.vert is not None else 0.0) + attrs["peak_long_ips"] = float(pv.long if pv and pv.long is not None else 0.0) + attrs["peak_pvs_ips"] = float(pv.peak_vector_sum if pv and pv.peak_vector_sum is not None else 0.0) + attrs["peak_mic_psi"] = float(pv.micl if pv and pv.micl is not None else 0.0) + attrs["tool_version"] = tool_version or "" + attrs["captured_at"] = captured_at.isoformat() + "Z" if captured_at.tzinfo is None else captured_at.isoformat() + attrs["source_kind"] = source_kind + + # /samples — physical-units float32 (the primary data). + sgrp = f.create_group("samples") + for ch, arr in geo_arrays.items(): + sgrp.create_dataset( + ch, data=arr, dtype="float32", + compression="gzip", compression_opts=4, shuffle=True, + ) + sgrp.create_dataset( + "MicL", data=mic_arr, dtype="float32", + compression="gzip", compression_opts=4, shuffle=True, + ) + + # /samples_int16 — optional raw ADC counts (preserved for analysis + # tools that want pre-conversion data). Cheap to include. + if include_int16: + igrp = f.create_group("samples_int16") + for ch in ("Tran", "Vert", "Long", "MicL"): + vals = raw.get(ch, []) + if vals: + igrp.create_dataset( + ch, data=np.asarray(vals, dtype=np.int16), + compression="gzip", compression_opts=4, shuffle=True, + ) + igrp.attrs["mic_psi_per_count"] = float(mic_factor) + + import os + os.replace(tmp, path) + + log.info( + "write_event_hdf5: %s n_samples=%d geo_fs=%.3f filesize=%d", + path, n_samples, geo_fs, path.stat().st_size, + ) + return { + "path": path, + "n_samples": n_samples, + "geo_full_scale_ips": geo_fs, + } + + +def read_event_hdf5(path: Union[str, Path]) -> dict: + """ + Load an event HDF5 into a plain dict (no Event reconstruction — + callers that want an Event can use the data directly). + + Returns: + { + "schema_version": int, + "kind": str, + "attrs": dict[str, …], # all root attributes + "samples": { # float32 lists in physical units + "Tran": ndarray, "Vert": ndarray, "Long": ndarray, "MicL": ndarray, + }, + "samples_int16": {…} or None, + "mic_psi_per_count": float | None, + } + + Raises FileNotFoundError if missing, ValueError on bad shape / + unsupported schema_version. + """ + path = Path(path) + with h5py.File(path, "r") as f: + attrs = {k: _h5_attr_value(v) for k, v in f.attrs.items()} + sv = attrs.get("schema_version", 0) + if not isinstance(sv, int) or sv < 1 or sv > SCHEMA_VERSION: + raise ValueError( + f"{path}: unsupported HDF5 schema_version={sv} " + f"(this build supports 1..{SCHEMA_VERSION})" + ) + if attrs.get("kind") != HDF5_KIND: + raise ValueError(f"{path}: kind != {HDF5_KIND!r} (got {attrs.get('kind')!r})") + + samples = {} + for ch in ("Tran", "Vert", "Long", "MicL"): + ds = f.get(f"samples/{ch}") + samples[ch] = np.asarray(ds[()]) if ds is not None else np.array([], dtype=np.float32) + + samples_int16 = None + mic_psi = None + igrp = f.get("samples_int16") + if igrp is not None: + samples_int16 = {} + for ch in ("Tran", "Vert", "Long", "MicL"): + ds = igrp.get(ch) + if ds is not None: + samples_int16[ch] = np.asarray(ds[()]) + mic_attr = igrp.attrs.get("mic_psi_per_count") + if mic_attr is not None: + mic_psi = float(mic_attr) + + return { + "schema_version": sv, + "kind": attrs.get("kind"), + "attrs": attrs, + "samples": samples, + "samples_int16": samples_int16, + "mic_psi_per_count": mic_psi, + } + + +def _h5_attr_value(v): + """Convert an h5py attribute value to a plain Python type.""" + if isinstance(v, bytes): + return v.decode("utf-8", errors="replace") + if isinstance(v, np.generic): + return v.item() + return v + + +# ── Plot-ready JSON ────────────────────────────────────────────────────────── + + +def event_to_plot_json( + event: Event, + *, + serial: str, + geo_range = "normal", + event_id: Optional[str] = None, + index: Optional[int] = None, +) -> dict: + """ + Build a `sfm.plot.v1` JSON dict directly from an Event (skipping HDF5). + + Used by: + - `/device/event/{idx}/waveform` (live device path) + - The CLI / tests for in-memory conversion sanity-checks. + + Stored events go through `plot_json_from_hdf5()` so the wire format + is identical regardless of whether the data came from the live device + or the on-disk HDF5. + """ + raw = event.raw_samples or {} + pv = event.peak_values + geo_fs = _resolve_geo_full_scale(geo_range) + geo_range_str = _normalise_range(geo_range) + sr = int(event.sample_rate or 0) or 1024 + pretrig = int(event.pretrig_samples or 0) + + geo_arrays = {ch: _samples_to_float(raw.get(ch, []), geo_fs).tolist() + for ch in ("Tran", "Vert", "Long")} + mic_int16 = raw.get("MicL", []) + mic_factor = _mic_scale_factor( + mic_int16, + getattr(pv, "micl", None) if pv else None, + ) + mic_arr = [float(v) * mic_factor for v in mic_int16] if mic_int16 else [] + + n = max( + (len(geo_arrays[ch]) for ch in geo_arrays), + default=len(mic_arr), + ) + return _build_plot_dict( + n_samples=n, + sample_rate=sr, + pretrig_samples=pretrig, + total_samples=int(event.total_samples or n), + rectime_seconds=float(event.rectime_seconds or 0.0), + timestamp_iso=_ts_iso(event.timestamp), + serial=serial, + record_type=event.record_type, + waveform_key=event._waveform_key.hex() if event._waveform_key else None, + geo_range=geo_range_str, + geo_fs=geo_fs, + channels_floats={ + "Tran": geo_arrays["Tran"], + "Vert": geo_arrays["Vert"], + "Long": geo_arrays["Long"], + "MicL": mic_arr, + }, + peaks_dict={ + "tran": getattr(pv, "tran", None) if pv else None, + "vert": getattr(pv, "vert", None) if pv else None, + "long": getattr(pv, "long", None) if pv else None, + "pvs": getattr(pv, "peak_vector_sum", None) if pv else None, + "mic": getattr(pv, "micl", None) if pv else None, + }, + event_id=event_id, + index=index if index is not None else event.index, + ) + + +def plot_json_from_hdf5( + path: Union[str, Path], + *, + event_id: Optional[str] = None, + index: Optional[int] = None, +) -> dict: + """Build a `sfm.plot.v1` JSON dict from a stored .h5 file.""" + data = read_event_hdf5(path) + a = data["attrs"] + s = data["samples"] + return _build_plot_dict( + n_samples=len(s["Tran"]) if "Tran" in s else 0, + sample_rate=int(a.get("sample_rate", 1024) or 1024), + pretrig_samples=int(a.get("pretrig_samples", 0) or 0), + total_samples=int(a.get("total_samples", 0) or 0), + rectime_seconds=float(a.get("rectime_seconds", 0.0) or 0.0), + timestamp_iso=a.get("timestamp", ""), + serial=a.get("serial", ""), + record_type=a.get("record_type", ""), + waveform_key=a.get("waveform_key", "") or None, + geo_range=a.get("geo_range", "normal"), + geo_fs=float(a.get("geo_full_scale_ips", 10.0) or 10.0), + channels_floats={ + "Tran": s.get("Tran", np.array([])).tolist(), + "Vert": s.get("Vert", np.array([])).tolist(), + "Long": s.get("Long", np.array([])).tolist(), + "MicL": s.get("MicL", np.array([])).tolist(), + }, + peaks_dict={ + "tran": float(a.get("peak_tran_ips", 0.0) or 0.0) or None, + "vert": float(a.get("peak_vert_ips", 0.0) or 0.0) or None, + "long": float(a.get("peak_long_ips", 0.0) or 0.0) or None, + "pvs": float(a.get("peak_pvs_ips", 0.0) or 0.0) or None, + "mic": float(a.get("peak_mic_psi", 0.0) or 0.0) or None, + }, + event_id=event_id, + index=index, + ) + + +def _build_plot_dict( + *, + n_samples: int, + sample_rate: int, + pretrig_samples: int, + total_samples: int, + rectime_seconds: float, + timestamp_iso: str, + serial: str, + record_type: Optional[str], + waveform_key: Optional[str], + geo_range: str, + geo_fs: float, + channels_floats: dict[str, list[float]], + peaks_dict: dict[str, Optional[float]], + event_id: Optional[str], + index: Optional[int] = None, +) -> dict: + dt_ms = (1000.0 / sample_rate) if sample_rate > 0 else 0.0 + t0_ms = -pretrig_samples * dt_ms + + def _ch(unit: str, values: list[float], peak: Optional[float]) -> dict: + # Locate the peak's time within the values array (max abs). + if values: + mags = [abs(v) for v in values] + i = mags.index(max(mags)) + peak_t_ms = round(t0_ms + i * dt_ms, 4) + peak_value = peak if peak is not None else values[i] + else: + peak_t_ms = None + peak_value = peak + return { + "unit": unit, + "values": values, + "peak": peak_value, + "peak_t_ms": peak_t_ms, + } + + return { + "schema": "sfm.plot.v1", + "event_id": event_id, + "index": index, + "serial": serial, + "timestamp": timestamp_iso, + "record_type": record_type, + "waveform_key": waveform_key, + + "time_axis": { + "sample_rate": sample_rate, + "pretrig_samples": pretrig_samples, + "total_samples": total_samples or n_samples, + "n_samples": n_samples, + "t0_ms": round(t0_ms, 4), + "dt_ms": round(dt_ms, 6), + "rectime_seconds": rectime_seconds, + }, + + "geo_range": geo_range, + "geo_full_scale_ips": geo_fs, + "trigger_ms": 0.0, + + "channels": { + "Tran": _ch("in/s", channels_floats.get("Tran", []), peaks_dict.get("tran")), + "Vert": _ch("in/s", channels_floats.get("Vert", []), peaks_dict.get("vert")), + "Long": _ch("in/s", channels_floats.get("Long", []), peaks_dict.get("long")), + "MicL": _ch("psi", channels_floats.get("MicL", []), peaks_dict.get("mic")), + }, + + "peak_values": { + "transverse": peaks_dict.get("tran"), + "vertical": peaks_dict.get("vert"), + "longitudinal": peaks_dict.get("long"), + "vector_sum": peaks_dict.get("pvs"), + "mic_psi": peaks_dict.get("mic"), + }, + } diff --git a/sfm/import_bw.py b/sfm/import_bw.py new file mode 100644 index 0000000..f49097b --- /dev/null +++ b/sfm/import_bw.py @@ -0,0 +1,194 @@ +""" +sfm/import_bw.py — CLI for ingesting Blastware-format event files. + +Walks a path (file or directory), parses each recognised event-file +binary, copies it into the canonical waveform store, writes the +.sfm.json sidecar, and upserts a row in seismo_relay.db. + +Use cases: + - Migrating a Blastware ACH inbox into SFM + - One-off imports of files emailed in by field crews + - Bulk-loading historical archives + +Usage: + python -m sfm.import_bw [--serial BE11529] + [--db-path bridges/captures/seismo_relay.db] + [--store-root bridges/captures/waveforms] + [--dry-run] + [-v] + +Examples: + python -m sfm.import_bw ~/Downloads/M529LKIQ.7M0W + python -m sfm.import_bw /path/to/blastware_archive --serial BE11529 +""" + +from __future__ import annotations + +import argparse +import logging +import sys +from pathlib import Path +from typing import Iterator + +# Allow running from the repo root without installation. +sys.path.insert(0, str(Path(__file__).resolve().parent.parent)) + +from sfm.database import SeismoDb +from sfm.waveform_store import WaveformStore + +log = logging.getLogger("sfm.import_bw") + + +# Blastware event-file extensions: 4-char `AB0T` (T = W or H) for ACH +# downloads, 3-char `AB0` for direct downloads. We discover candidates +# by length + last-char rather than enumerating every (A, B) pair. +def _looks_like_bw_event(path: Path) -> bool: + """Heuristic: 3-char or 4-char extension, ends with W/H/0, and the + file is at least 70 bytes (header + STRT + footer minimum).""" + if not path.is_file(): + return False + ext = path.suffix.lstrip(".") + if not (3 <= len(ext) <= 4): + return False + if not (ext[-1].upper() in {"W", "H"} or ext.endswith("0")): + return False + try: + return path.stat().st_size >= 70 + except OSError: + return False + + +def _walk(path: Path) -> Iterator[Path]: + """Yield candidate BW event-file paths under `path` (file or dir).""" + if path.is_file(): + if _looks_like_bw_event(path): + yield path + return + if path.is_dir(): + for p in sorted(path.rglob("*")): + if _looks_like_bw_event(p): + yield p + + +def main(argv: list[str] | None = None) -> int: + p = argparse.ArgumentParser( + description="Import Blastware-format event files into the SFM store + DB.", + ) + p.add_argument("path", help="File or directory to import.") + p.add_argument( + "--serial", default=None, metavar="SERIAL", + help="Override the serial-number hint (e.g. BE11529). Defaults to " + "the value decoded from each BW filename's prefix.", + ) + p.add_argument( + "--db-path", + default=str(Path(__file__).resolve().parent.parent / "bridges" / "captures" / "seismo_relay.db"), + help="Path to seismo_relay.db (default: bridges/captures/seismo_relay.db).", + ) + p.add_argument( + "--store-root", + default=None, + help="Root of the waveform store (default: /waveforms).", + ) + p.add_argument( + "--dry-run", action="store_true", + help="Parse and report per-file outcomes; don't write anything.", + ) + p.add_argument("-v", "--verbose", action="store_true", help="Debug logging.") + args = p.parse_args(argv) + + logging.basicConfig( + level=logging.DEBUG if args.verbose else logging.INFO, + format="%(asctime)s %(levelname)-7s %(name)s %(message)s", + datefmt="%H:%M:%S", + ) + + src = Path(args.path).expanduser().resolve() + if not src.exists(): + print(f"error: {src} does not exist", file=sys.stderr) + return 2 + + db_path = Path(args.db_path).expanduser().resolve() + store_root = ( + Path(args.store_root).expanduser().resolve() + if args.store_root else db_path.parent / "waveforms" + ) + + db = None if args.dry_run else SeismoDb(db_path) + store = None if args.dry_run else WaveformStore(store_root) + + candidates = list(_walk(src)) + if not candidates: + print(f"No BW event-file candidates found under {src}", file=sys.stderr) + return 1 + + print(f"Importing {len(candidates)} file(s) from {src}...") + if args.dry_run: + print("(dry-run — no writes will occur)") + + ok = err = skipped = 0 + for path in candidates: + try: + bw_bytes = path.read_bytes() + except Exception as exc: + print(f" [ERR ] {path}: read failed: {exc}") + err += 1 + continue + + if args.dry_run: + # Just parse to verify integrity; don't touch DB or store. + from minimateplus import event_file_io + try: + ev = event_file_io.read_blastware_file(path) + ts = ev.timestamp and ( + f"{ev.timestamp.year}-{ev.timestamp.month:02d}-{ev.timestamp.day:02d} " + f"{ev.timestamp.hour:02d}:{ev.timestamp.minute:02d}:{ev.timestamp.second:02d}" + ) or "?" + pv = ev.peak_values + pvs = pv.peak_vector_sum if pv and pv.peak_vector_sum is not None else 0.0 + print(f" [OK ] {path.name} ts={ts} PVS={pvs:.4f}") + ok += 1 + except Exception as exc: + print(f" [ERR ] {path}: parse failed: {exc}") + err += 1 + continue + + try: + ev, rec = store.save_imported_bw( + bw_bytes, source_path=path, serial_hint=args.serial, + ) + # Resolve serial for the DB row. Prefer the hint, then the + # one decoded from the filename (already done by the store). + serial_used = args.serial or _infer_serial(path.name) or "UNKNOWN" + ins, sk = db.insert_events( + [ev], serial=serial_used, + waveform_records=( + {ev._waveform_key.hex(): rec} + if ev._waveform_key else None + ), + ) + tag = "OK " if ins else ("SKIP" if sk else "OK ") + print(f" [{tag}] {path.name} → {rec['filename']} " + f"({rec['filesize']} B, sha256={rec['sha256'][:12]}…) " + f"serial={serial_used} ins={ins} skip={sk}") + if ins: + ok += 1 + else: + skipped += 1 + except Exception as exc: + print(f" [ERR ] {path}: import failed: {exc}") + log.debug("traceback", exc_info=True) + err += 1 + + print(f"\nDone. ok={ok} skipped={skipped} errors={err}") + return 0 if err == 0 else 1 + + +def _infer_serial(filename: str): + """Reuse WaveformStore's filename → serial decoder for log output.""" + from sfm.waveform_store import _serial_from_bw_filename + return _serial_from_bw_filename(filename) + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/sfm/live_cache.py b/sfm/live_cache.py new file mode 100644 index 0000000..9c7cf10 --- /dev/null +++ b/sfm/live_cache.py @@ -0,0 +1,189 @@ +""" +sfm/live_cache.py — Thread-safe in-memory cache for live SFM device data. + +Extracted from sfm/server.py so the cache logic is importable and testable +without pulling in fastapi/uvicorn. + +Caching strategy +---------------- +Keyed by `conn_key` ("tcp:host:port" or "serial:port:baud"). Does NOT +persist across server restarts. + + device_info cached until POST /device/config marks it dirty + events cached by (conn_key, device_event_count); re-fetched when + a quick count_events() probe shows new events on the device + monitor_status 30-second TTL (changes frequently during monitoring) + waveforms permanent within a process — but auto-evicted at the device + level when a (waveform_key, timestamp) mismatch is detected + at the same index (post-erase key reuse — the device's + event-key counter resets to 0x01110000 after every erase, + so the same `(conn_key, index)` slot can refer to a + brand-new physical event). + +All endpoints accept ?force=true to bypass the cache and re-read. +""" + +from __future__ import annotations + +import threading +import time +from typing import Optional + +_MONITOR_STATUS_TTL = 30.0 # seconds + + +class LiveCache: + """ + Thread-safe in-memory cache for live SFM device data. + One singleton per server process. + """ + + def __init__(self) -> None: + self._lock = threading.Lock() + self._device_info: dict[str, dict] = {} + self._events: dict[str, tuple[int, list]] = {} + self._monitor_status: dict[str, tuple[float, dict]] = {} + self._config_dirty: dict[str, bool] = {} + self._waveforms: dict[tuple, dict] = {} + + # ── Connection key ──────────────────────────────────────────────────────── + + @staticmethod + def make_conn_key( + host: Optional[str], + tcp_port: int, + port: Optional[str], + baud: int, + ) -> str: + if host: + return f"tcp:{host}:{tcp_port}" + return f"serial:{port}:{baud}" + + # ── Eviction signature ──────────────────────────────────────────────────── + + @staticmethod + def _event_signature(ev: dict) -> tuple[Optional[str], Optional[str]]: + """Return (waveform_key_hex, timestamp_iso) from a serialised event.""" + key = ev.get("waveform_key") or ev.get("_waveform_key") + if isinstance(key, (bytes, bytearray)): + key = bytes(key).hex() + ts = ev.get("timestamp") + if isinstance(ts, dict): + ts = ts.get("iso") or ts.get("string") or None + return (key if isinstance(key, str) else None, + ts if isinstance(ts, str) else None) + + def _flush_device(self, conn_key: str) -> None: + """Drop all cached events + waveforms for one device. Caller holds lock.""" + self._events.pop(conn_key, None) + stale_wf_keys = [k for k in self._waveforms if k[0] == conn_key] + for k in stale_wf_keys: + self._waveforms.pop(k, None) + + # ── Device info ─────────────────────────────────────────────────────────── + + def get_device_info(self, conn_key: str) -> Optional[dict]: + with self._lock: + if self._config_dirty.get(conn_key): + return None + return self._device_info.get(conn_key) + + def set_device_info(self, conn_key: str, info: dict) -> None: + with self._lock: + self._device_info[conn_key] = info + self._config_dirty[conn_key] = False + + # ── Events ──────────────────────────────────────────────────────────────── + + def get_events(self, conn_key: str, device_count: int) -> Optional[list]: + with self._lock: + if self._config_dirty.get(conn_key): + return None + entry = self._events.get(conn_key) + if entry is None: + return None + cached_count, events = entry + return events if cached_count == device_count else None + + def set_events(self, conn_key: str, device_count: int, events: list) -> None: + """ + Replace the cached events list for `conn_key`. If any incoming event + has a different (waveform_key, timestamp) than the cached entry at + the same index, flush the entire conn_key's event + waveform cache + first. Catches post-erase key reuse. + """ + with self._lock: + cached_entry = self._events.get(conn_key) + cached_events = cached_entry[1] if cached_entry else [] + cached_by_index = {e.get("index"): e for e in cached_events} + + evict = False + for ev in events: + idx = ev.get("index") + if idx is None: + continue + cached = cached_by_index.get(idx) + if cached is None: + continue + new_key, new_ts = self._event_signature(ev) + old_key, old_ts = self._event_signature(cached) + if (new_key and old_key and new_key != old_key) or \ + (new_ts and old_ts and new_ts != old_ts): + evict = True + break + + if evict: + self._flush_device(conn_key) + + self._events[conn_key] = (device_count, events) + + # ── Monitor status ──────────────────────────────────────────────────────── + + def get_monitor_status(self, conn_key: str) -> Optional[dict]: + with self._lock: + entry = self._monitor_status.get(conn_key) + if entry is None: + return None + fetched_at, status = entry + if time.time() - fetched_at > _MONITOR_STATUS_TTL: + return None + return status + + def set_monitor_status(self, conn_key: str, status: dict) -> None: + with self._lock: + self._monitor_status[conn_key] = (time.time(), status) + + def invalidate_monitor_status(self, conn_key: str) -> None: + with self._lock: + self._monitor_status.pop(conn_key, None) + + # ── Config dirty flag ───────────────────────────────────────────────────── + + def mark_config_dirty(self, conn_key: str) -> None: + with self._lock: + self._config_dirty[conn_key] = True + self._events.pop(conn_key, None) + + # ── Waveforms (permanent cache, evicted on (key,ts) mismatch) ───────────── + + def get_waveform(self, conn_key: str, index: int) -> Optional[dict]: + with self._lock: + return self._waveforms.get((conn_key, index)) + + def set_waveform(self, conn_key: str, index: int, waveform: dict) -> None: + """ + Cache a waveform. Evicts the device's whole cache when the existing + entry at the same index has a different (waveform_key, timestamp). + """ + with self._lock: + existing = self._waveforms.get((conn_key, index)) + if existing is not None: + new_key, new_ts = self._event_signature(waveform) + old_key, old_ts = self._event_signature(existing) + differs = ( + (new_key and old_key and new_key != old_key) + or (new_ts and old_ts and new_ts != old_ts) + ) + if differs: + self._flush_device(conn_key) + self._waveforms[(conn_key, index)] = waveform diff --git a/sfm/server.py b/sfm/server.py index 9683254..1f9988c 100644 --- a/sfm/server.py +++ b/sfm/server.py @@ -45,9 +45,9 @@ from typing import Optional # FastAPI / Pydantic try: - from fastapi import Body, FastAPI, HTTPException, Query + from fastapi import Body, FastAPI, File, HTTPException, Query, UploadFile from fastapi.middleware.cors import CORSMiddleware - from fastapi.responses import FileResponse, JSONResponse + from fastapi.responses import FileResponse, JSONResponse, StreamingResponse from pydantic import BaseModel import uvicorn except ImportError: @@ -63,8 +63,12 @@ from minimateplus.protocol import ProtocolError from minimateplus.models import CallHomeConfig, ComplianceConfig, DeviceInfo, Event, PeakValues, ProjectInfo, Timestamp from minimateplus.transport import TcpTransport, DEFAULT_TCP_PORT from minimateplus.blastware_file import write_blastware_file, blastware_filename +from minimateplus.client import _decode_a5_metadata_into, _decode_a5_waveform +from sfm import event_hdf5 from sfm.cache import SFMCache, get_cache from sfm.database import SeismoDb +from sfm.live_cache import LiveCache as _LiveCache +from sfm.waveform_store import WaveformStore logging.basicConfig( level=logging.INFO, @@ -101,6 +105,7 @@ app.add_middleware( _DEFAULT_DB_PATH = Path(__file__).parent.parent / "bridges" / "captures" / "seismo_relay.db" _db: Optional[SeismoDb] = None +_store: Optional[WaveformStore] = None def _get_db() -> SeismoDb: @@ -110,6 +115,18 @@ def _get_db() -> SeismoDb: return _db +def _get_store() -> WaveformStore: + """ + Persistent event-file + A5-sidecar store, rooted at /waveforms/. + Mirrors the layout used by bridges/ach_server.py so files saved by ACH + ingestion and by live SFM downloads share one canonical location. + """ + global _store + if _store is None: + _store = WaveformStore(_get_db().db_path.parent / "waveforms") + return _store + + # ── Live device cache ───────────────────────────────────────────────────────── # In-memory cache for live device data. Avoids re-dialing the device on every # request when the data hasn't changed. @@ -127,116 +144,6 @@ def _get_db() -> SeismoDb: # # All endpoints accept ?force=true to bypass the cache and re-read from device. -_MONITOR_STATUS_TTL = 30.0 # seconds - - -class _LiveCache: - """ - Thread-safe in-memory cache for live SFM device data. - One singleton per server process. - """ - - def __init__(self) -> None: - self._lock = threading.Lock() - # conn_key → serialised device info dict - self._device_info: dict[str, dict] = {} - # conn_key → (device_event_count_when_cached, [event dicts]) - self._events: dict[str, tuple[int, list]] = {} - # conn_key → (fetched_at_unix, status_dict) - self._monitor_status: dict[str, tuple[float, dict]] = {} - # conn_key → bool (True = re-read device on next /device/info) - self._config_dirty: dict[str, bool] = {} - # (conn_key, event_index) → waveform dict (permanent) - self._waveforms: dict[tuple, dict] = {} - - # ── Connection key ──────────────────────────────────────────────────────── - - @staticmethod - def make_conn_key( - host: Optional[str], - tcp_port: int, - port: Optional[str], - baud: int, - ) -> str: - if host: - return f"tcp:{host}:{tcp_port}" - return f"serial:{port}:{baud}" - - # ── Device info ─────────────────────────────────────────────────────────── - - def get_device_info(self, conn_key: str) -> Optional[dict]: - with self._lock: - if self._config_dirty.get(conn_key): - return None - return self._device_info.get(conn_key) - - def set_device_info(self, conn_key: str, info: dict) -> None: - with self._lock: - self._device_info[conn_key] = info - self._config_dirty[conn_key] = False - - # ── Events ──────────────────────────────────────────────────────────────── - - def get_events(self, conn_key: str, device_count: int) -> Optional[list]: - """ - Return cached events if the device's current event count matches what - we had when we last fetched. Returns None (cache miss) otherwise. - """ - with self._lock: - if self._config_dirty.get(conn_key): - return None - entry = self._events.get(conn_key) - if entry is None: - return None - cached_count, events = entry - return events if cached_count == device_count else None - - def set_events(self, conn_key: str, device_count: int, events: list) -> None: - with self._lock: - self._events[conn_key] = (device_count, events) - - # ── Monitor status ──────────────────────────────────────────────────────── - - def get_monitor_status(self, conn_key: str) -> Optional[dict]: - with self._lock: - entry = self._monitor_status.get(conn_key) - if entry is None: - return None - fetched_at, status = entry - if time.time() - fetched_at > _MONITOR_STATUS_TTL: - return None - return status - - def set_monitor_status(self, conn_key: str, status: dict) -> None: - with self._lock: - self._monitor_status[conn_key] = (time.time(), status) - - def invalidate_monitor_status(self, conn_key: str) -> None: - with self._lock: - self._monitor_status.pop(conn_key, None) - - # ── Config dirty flag ───────────────────────────────────────────────────── - - def mark_config_dirty(self, conn_key: str) -> None: - """ - Called after a successful POST /device/config write. - Forces next /device/info and /device/events to re-read from the device. - """ - with self._lock: - self._config_dirty[conn_key] = True - self._events.pop(conn_key, None) - - # ── Waveforms (permanent cache) ─────────────────────────────────────────── - - def get_waveform(self, conn_key: str, index: int) -> Optional[dict]: - with self._lock: - return self._waveforms.get((conn_key, index)) - - def set_waveform(self, conn_key: str, index: int, waveform: dict) -> None: - with self._lock: - self._waveforms[(conn_key, index)] = waveform - - _live_cache = _LiveCache() @@ -783,7 +690,7 @@ def device_event_waveform( if the device is not storing all frames yet, or the capture was partial) - **sample_rate**: samples per second (from compliance config) - **channels**: dict of channel name → list of signed int16 ADC counts - (keys: "Tran", "Vert", "Long", "Mic") + (keys: "Tran", "Vert", "Long", "MicL") **Caching**: full waveforms are cached permanently after the first download — they are immutable once recorded on the device. Subsequent requests for the @@ -826,26 +733,33 @@ def device_event_waveform( detail=f"Event index {index} not found on device", ) - raw = getattr(ev, "raw_samples", None) or {} - samples_decoded = len(raw.get("Tran", [])) + # Backfill from compliance_config: sample_rate, record_time, and + # derived total_samples. These are user-set authoritative values; the + # corresponding STRT-derived guesses in `_decode_a5_waveform` can be + # off (e.g. rectime used to read the 0x46 record-type marker = 70s). + cc = info.compliance_config + if cc: + if ev.sample_rate is None and cc.sample_rate: + ev.sample_rate = cc.sample_rate + if cc.record_time: + ev.rectime_seconds = cc.record_time + if ev.sample_rate and ev.rectime_seconds: + derived = int(round(ev.sample_rate * ev.rectime_seconds)) + if (ev.total_samples is None + or ev.total_samples > derived * 2 + or ev.total_samples < derived // 4): + ev.total_samples = derived + geo_range = getattr(cc, "geo_range", None) if cc else None - # Resolve sample_rate from compliance config if not on the event itself - sample_rate = ev.sample_rate - if sample_rate is None and info.compliance_config: - sample_rate = info.compliance_config.sample_rate - - result = { - "index": ev.index, - "record_type": ev.record_type, - "timestamp": _serialise_timestamp(ev.timestamp), - "total_samples": ev.total_samples, - "pretrig_samples": ev.pretrig_samples, - "rectime_seconds": ev.rectime_seconds, - "samples_decoded": samples_decoded, - "sample_rate": sample_rate, - "peak_values": _serialise_peak_values(ev.peak_values), - "channels": raw, - } + # Build the plot.v1 JSON: samples in physical units (in/s for geo, psi + # for mic), explicit time axis, peak markers — the shape clients should + # consume directly without doing any ADC scaling. + serial = getattr(info, "serial", None) or "" + result = event_hdf5.event_to_plot_json( + ev, serial=serial, + geo_range=geo_range or "normal", + index=index, + ) cache.set_waveform(conn_key, index, result) return result @@ -857,6 +771,7 @@ def device_event_blastware_file( baud: int = Query(38400, description="Serial baud rate"), host: Optional[str] = Query(None, description="TCP host — modem IP or ACH relay"), tcp_port: int = Query(DEFAULT_TCP_PORT, description=f"TCP port (default {DEFAULT_TCP_PORT})"), + force: bool = Query(False, description="Bypass any cached/dedup'd state and re-download from device"), ) -> FileResponse: """ Download the waveform for a single event (0-based index) and return it @@ -874,24 +789,29 @@ def device_event_blastware_file( triggered events; histogram requires recording_mode to be populated from compliance config) - Performs: POLL startup → get_events(full_waveform=False, extra_chunks=1, - stop_after_index=index) → write_blastware_file() → FileResponse. + Performs: POLL startup → get_events(full_waveform=True, + stop_after_index=index) → write_blastware_file() → FileResponse + + persistent store + DB upsert. """ log.info( - "GET /device/event/%d/blastware_file port=%s host=%s", - index, port, host, + "GET /device/event/%d/blastware_file port=%s host=%s force=%s", + index, port, host, force, ) + # `force` always re-downloads from the device. This endpoint already + # never short-circuits via cache, so `force` is reserved for parity with + # the other live endpoints. try: def _do(): with _build_client(port, baud, host, tcp_port, timeout=120.0) as client: info = client.connect() - # Under v0.14.0 BW-exact 5A walk, the chunk loop is bounded by - # the event end_offset extracted from STRT. No more - # stop_after_metadata / extra_chunks gymnastics — these - # kwargs are now no-ops. + # full_waveform=True pulls the complete 5A stream so the + # client populates STRT-derived fields (total_samples, + # pretrig_samples, rectime_seconds) AND raw_samples on the + # Event. Required for the .h5 + .sfm.json sidecar to be + # filled in correctly — without it, those land as nulls. events = client.get_events( - full_waveform=False, + full_waveform=True, stop_after_index=index, ) matching = [ev for ev in events if ev.index == index] @@ -946,6 +866,54 @@ def device_event_blastware_file( out_path, len(a5_frames), serial, ) + # Promote to canonical persistent store + DB row so this event is + # queryable via /db/events afterwards (matches the ACH ingestion path). + if serial != "UNKNOWN" and ev._waveform_key is not None: + try: + cc = info.compliance_config + # Backfill authoritative compliance-config values onto the + # Event before persisting. These supersede whatever + # _decode_a5_waveform read from the STRT bytes (some of which + # have ambiguous semantics — e.g. STRT[20] is rectime but + # STRT[8:10] / STRT[16:18] are device-specific scratch fields + # that aren't reliable sample/pretrig counts). + if cc: + if ev.sample_rate is None and cc.sample_rate: + ev.sample_rate = cc.sample_rate + if cc.record_time: + # record_time from compliance is authoritative — the + # user-set value the device followed when recording. + ev.rectime_seconds = cc.record_time + # Derive total_samples from sample_rate × rectime when + # we can; the STRT-derived value can land at a buffer- + # offset rather than a sample count. + if ev.sample_rate and ev.rectime_seconds: + derived = int(round(ev.sample_rate * ev.rectime_seconds)) + if (ev.total_samples is None + or ev.total_samples > derived * 2 + or ev.total_samples < derived // 4): + ev.total_samples = derived + geo_range = getattr(cc, "geo_range", None) if cc else None + rec = _get_store().save( + ev, serial=serial, a5_frames=a5_frames, + geo_range=geo_range if geo_range is not None else "normal", + ) + _get_db().insert_events( + [ev], + serial=serial, + waveform_records={ev._waveform_key.hex(): rec}, + ) + log.info( + "blastware_file: persisted to store (%s, %d bytes)", + rec["filename"], rec["filesize"], + ) + except Exception as exc: + log.warning( + "blastware_file: persistent store save failed: %s " + "— temp file still served", + exc, + ) + return FileResponse( path=str(out_path), filename=filename, @@ -1435,6 +1403,334 @@ def db_set_false_trigger( return {"status": "ok", "event_id": event_id, "false_trigger": value} +# ── /db/events/{id} — waveform file accessors ───────────────────────────────── +# +# These endpoints serve files from the persistent WaveformStore, so a Blastware +# file or its decoded JSON for a previously-ingested ACH event can be fetched +# without re-dialing the device. + +@app.get("/db/events/{event_id}/blastware_file") +def db_event_blastware_file(event_id: str) -> FileResponse: + """ + Return the Blastware-format event file for a previously-ingested + event. Filename extension is per-event (timestamp-encoded + `AB0T` for ACH downloads, 3-char `AB0` for direct downloads). + 404 if the event is unknown or has no event file in the store + (events ingested before the store was wired will show this — + re-download via the live endpoint to populate). + """ + row = _get_db().get_event(event_id) + if row is None: + raise HTTPException(status_code=404, detail=f"Event {event_id} not found") + serial = row.get("serial") + filename = row.get("blastware_filename") + if not serial or not filename: + raise HTTPException( + status_code=404, + detail=( + f"Event {event_id} has no Blastware file in the store. " + "Re-download via the live endpoint to populate." + ), + ) + bw_path = _get_store().open_blastware(serial, filename) + if bw_path is None: + raise HTTPException( + status_code=410, + detail=f"Stored file missing on disk: {filename}", + ) + return FileResponse( + path=str(bw_path), + filename=filename, + media_type="application/octet-stream", + ) + + +@app.get("/db/events/{event_id}/waveform.json") +def db_event_waveform_json(event_id: str) -> dict: + """ + Return the plot-ready JSON (`sfm.plot.v1`) for a stored event. + + Resolution order (cheapest first): + 1. If `.h5` exists, serve it via `plot_json_from_hdf5`. + Samples are already in physical units; no decode work needed. + 2. Else if `.a5.pkl` exists, replay the A5 decoders to + rebuild an Event and serialise via `event_to_plot_json`. + 3. Else 404 — the event has no waveform data on disk. + + The shape is identical regardless of source, so clients (the SFM + webapp, Terra-View, etc.) consume the same `sfm.plot.v1` payload. + """ + row = _get_db().get_event(event_id) + if row is None: + raise HTTPException(status_code=404, detail=f"Event {event_id} not found") + serial = row.get("serial") + filename = row.get("blastware_filename") + if not serial or not filename: + raise HTTPException( + status_code=404, + detail=f"Event {event_id} has no event file in the store", + ) + store = _get_store() + + # Path 1: HDF5 (canonical clean format). + h5_path = store.hdf5_path_for(serial, filename) + if h5_path.exists(): + try: + return event_hdf5.plot_json_from_hdf5(h5_path, event_id=event_id) + except Exception as exc: + log.warning("HDF5 read failed (%s); falling back to A5 path", exc) + + # Path 2: A5 pickle replay. + a5_frames = store.load_a5(serial, filename) + if not a5_frames: + raise HTTPException( + status_code=404, + detail=( + f"Event {event_id} has no waveform data on disk " + "(no .h5 and no .a5.pkl). Run the backfill script or " + "re-download via the live endpoint to populate." + ), + ) + + ev = Event(index=-1) + try: + _decode_a5_metadata_into(a5_frames, ev) + except Exception as exc: + log.warning("db_event_waveform_json: metadata decode failed: %s", exc) + try: + _decode_a5_waveform(a5_frames, ev) + except Exception as exc: + log.error("db_event_waveform_json: waveform decode failed: %s", exc, exc_info=True) + raise HTTPException(status_code=500, detail=f"Waveform decode failed: {exc}") from exc + + # Carry over fields from the DB row when the A5 replay didn't fill them. + if ev.sample_rate is None and row.get("sample_rate"): + ev.sample_rate = row.get("sample_rate") + + return event_hdf5.event_to_plot_json( + ev, serial=serial, geo_range="normal", event_id=event_id, + ) + + +# ── /db/events/{id}/sidecar — modern .sfm.json review/metadata accessors ────── + + +class SidecarPatchBody(BaseModel): + """Body for PATCH /db/events/{id}/sidecar. + + JSON-merge-patch semantics: only the keys you include get updated. + `review` is the editable block for monthly-summary workflows + (false_trigger flag, reviewer notes, etc.); `extensions` is the + forward-compat namespace for vendor / future fields. + """ + review: Optional[dict] = None + extensions: Optional[dict] = None + + +@app.get("/db/events/{event_id}/sidecar") +def db_event_sidecar(event_id: str) -> dict: + """ + Return the .sfm.json sidecar for a stored event. 404 if the event + is unknown or has no sidecar in the store (events ingested before + the sidecar feature landed will show this until backfilled). + """ + row = _get_db().get_event(event_id) + if row is None: + raise HTTPException(status_code=404, detail=f"Event {event_id} not found") + serial = row.get("serial") + filename = row.get("blastware_filename") + if not serial or not filename: + raise HTTPException( + status_code=404, + detail=f"Event {event_id} has no event file in the store", + ) + sidecar = _get_store().load_sidecar(serial, filename) + if sidecar is None: + raise HTTPException( + status_code=404, + detail=( + f"No .sfm.json sidecar on disk for {filename}. " + "Run scripts/backfill_sidecars.py to generate one." + ), + ) + return sidecar + + +@app.patch("/db/events/{event_id}/sidecar") +def db_event_sidecar_patch(event_id: str, body: SidecarPatchBody) -> dict: + """ + JSON-merge-patch the sidecar's `review` and/or `extensions` blocks. + + The sidecar JSON is the source of truth for review state. When + `review.false_trigger` is updated, the SQL `events.false_trigger` + column is kept in sync as a derived index for fast filtering. + + Returns the new full sidecar. 404 if the event or sidecar is missing. + """ + row = _get_db().get_event(event_id) + if row is None: + raise HTTPException(status_code=404, detail=f"Event {event_id} not found") + serial = row.get("serial") + filename = row.get("blastware_filename") + if not serial or not filename: + raise HTTPException( + status_code=404, + detail=f"Event {event_id} has no event file in the store", + ) + + if not (body.review or body.extensions): + raise HTTPException( + status_code=400, + detail="PATCH body must include `review` and/or `extensions`", + ) + + new_sidecar = _get_store().patch_sidecar( + serial, filename, + review=body.review, + extensions=body.extensions, + ) + if new_sidecar is None: + raise HTTPException( + status_code=404, + detail=f"No .sfm.json sidecar on disk for {filename}", + ) + + # Mirror false_trigger from review block into the SQL index column. + if body.review is not None: + _get_db().update_event_review(event_id, new_sidecar.get("review", {})) + + return new_sidecar + + +# ── /db/import/blastware_file — ingest BW-only event files ──────────────────── + + +@app.post("/db/import/blastware_file") +async def db_import_blastware_file( + files: list[UploadFile] = File(...), + serial: Optional[str] = Query(None, description="Optional serial-number hint (e.g. BE11529); falls back to the BW filename's encoded prefix when omitted"), +) -> dict: + """ + Multipart upload of one or more Blastware event file binaries + (typically produced by Blastware's own ACH). For each file: + + 1. Parse the bytes via WaveformStore.save_imported_bw — produces + a parsed Event + copies the file into the persistent store + + writes a .sfm.json sidecar with source.kind = "bw-import". + 2. Upsert a row into `events` (dedup'd on serial+timestamp). + + Response includes per-file outcomes so the caller can see which + landed cleanly and which failed (e.g. malformed file, unknown + serial, etc.). + """ + store = _get_store() + db = _get_db() + results: list[dict] = [] + + for upload in files: + try: + content = await upload.read() + except Exception as exc: + results.append({ + "filename": upload.filename, "status": "error", + "detail": f"read failed: {exc}", + }) + continue + + try: + ev, rec = store.save_imported_bw( + content, + source_path=Path(upload.filename or "imported.bw"), + serial_hint=serial, + ) + inserted, skipped = db.insert_events( + [ev], + serial=(serial or _serial_from_event(ev) or "UNKNOWN"), + waveform_records={ + ev._waveform_key.hex(): rec + if ev._waveform_key else None + } if ev._waveform_key else None, + ) + results.append({ + "filename": upload.filename, + "status": "ok", + "stored_filename": rec["filename"], + "filesize": rec["filesize"], + "sha256": rec["sha256"], + "inserted": inserted, + "skipped": skipped, + }) + except Exception as exc: + log.error("import failed for %s: %s", upload.filename, exc, exc_info=True) + results.append({ + "filename": upload.filename, "status": "error", + "detail": str(exc), + }) + + return {"count": len(results), "results": results} + + +def _serial_from_event(ev) -> Optional[str]: + """Fallback serial resolver — currently relies on the BW filename + decoder via WaveformStore.save_imported_bw, so this is just a + placeholder for future enhancement (e.g. inferring from project_info).""" + return None + + +@app.get("/db/units/{serial}/waveforms.zip") +def db_unit_waveforms_zip( + serial: str, + from_dt: Optional[str] = Query(None, description="ISO-8601 start datetime (inclusive)"), + to_dt: Optional[str] = Query(None, description="ISO-8601 end datetime (inclusive)"), + limit: int = Query(5000, description="Hard cap on events bundled (default 5000)"), +) -> StreamingResponse: + """ + Stream a ZIP of all event files for a serial in the optional date range. + Events without a stored event file are silently skipped. + """ + import io + import zipfile + + from_parsed = datetime.datetime.fromisoformat(from_dt) if from_dt else None + to_parsed = datetime.datetime.fromisoformat(to_dt) if to_dt else None + + rows = _get_db().query_events( + serial=serial, + from_dt=from_parsed, + to_dt=to_parsed, + limit=limit, + offset=0, + ) + store = _get_store() + + buf = io.BytesIO() + written = 0 + with zipfile.ZipFile(buf, "w", compression=zipfile.ZIP_DEFLATED) as zf: + for row in rows: + fn = row.get("blastware_filename") + if not fn: + continue + bw_path = store.open_blastware(serial, fn) + if bw_path is None: + continue + zf.write(bw_path, arcname=fn) + written += 1 + + if written == 0: + raise HTTPException( + status_code=404, + detail=f"No stored Blastware files found for serial {serial} in range", + ) + + buf.seek(0) + safe_serial = serial.replace("/", "_") + headers = { + "Content-Disposition": f'attachment; filename="{safe_serial}_waveforms.zip"', + "X-Waveform-Count": str(written), + } + return StreamingResponse(buf, media_type="application/zip", headers=headers) + + @app.get("/db/monitor_log") def db_monitor_log( serial: Optional[str] = Query(None, description="Filter by unit serial"), diff --git a/sfm/sfm_webapp.html b/sfm/sfm_webapp.html index a763b39..17474b4 100644 --- a/sfm/sfm_webapp.html +++ b/sfm/sfm_webapp.html @@ -609,6 +609,147 @@ .section-btn:hover { color: var(--text); } .section-btn.active { background: var(--blue); color: #fff; } + /* ── Force-refresh toggle ── */ + .force-toggle { + display: flex; + align-items: center; + gap: 6px; + padding: 4px 10px; + border: 1px solid var(--border); + border-radius: 6px; + background: var(--bg); + cursor: pointer; + font-size: 11px; + font-weight: 600; + color: var(--text-dim); + user-select: none; + white-space: nowrap; + transition: background 0.12s, color 0.12s, border-color 0.12s; + } + .force-toggle input { margin: 0; cursor: pointer; } + .force-toggle:hover { color: var(--text); } + .force-toggle.active { + background: rgba(248, 81, 73, 0.18); + border-color: #f85149; + color: #ff7b72; + } + .force-toggle .ft-dot { + width: 6px; height: 6px; border-radius: 50%; + background: var(--text-mute); + } + .force-toggle.active .ft-dot { background: #f85149; box-shadow: 0 0 6px #f85149; } + + /* ── Sidecar review modal ── */ + .sc-overlay { + position: fixed; inset: 0; + background: rgba(0,0,0,0.55); + display: none; + align-items: center; + justify-content: center; + z-index: 100; + } + .sc-overlay.visible { display: flex; } + .sc-modal { + background: var(--surface2); + border: 1px solid var(--border); + border-radius: 8px; + width: min(720px, 92vw); + max-height: 88vh; + display: flex; + flex-direction: column; + box-shadow: 0 8px 32px rgba(0,0,0,0.5); + } + .sc-header { + display: flex; align-items: center; justify-content: space-between; + padding: 14px 18px; + border-bottom: 1px solid var(--border); + } + .sc-header h3 { + margin: 0; font-size: 14px; font-weight: 600; + color: var(--text); font-family: monospace; + } + .sc-close { + background: none; border: none; cursor: pointer; + color: var(--text-mute); font-size: 18px; line-height: 1; + padding: 4px 8px; border-radius: 4px; + } + .sc-close:hover { background: var(--surface); color: var(--text); } + .sc-body { + flex: 1; overflow-y: auto; + padding: 16px 18px; + display: flex; flex-direction: column; gap: 14px; + } + .sc-section { + display: flex; flex-direction: column; gap: 6px; + } + .sc-section h4 { + margin: 0 0 4px; + font-size: 11px; font-weight: 600; + color: var(--text-mute); text-transform: uppercase; + letter-spacing: 0.6px; + } + .sc-grid { + display: grid; + grid-template-columns: 130px 1fr; + gap: 4px 12px; + font-size: 12px; + } + .sc-grid dt { color: var(--text-mute); } + .sc-grid dd { margin: 0; color: var(--text); font-family: monospace; word-break: break-all; } + .sc-row { display: flex; align-items: center; gap: 8px; font-size: 13px; } + .sc-row label { color: var(--text-dim); } + .sc-row input[type="checkbox"] { cursor: pointer; } + .sc-row input[type="text"], .sc-body textarea { + flex: 1; + background: var(--bg); + border: 1px solid var(--border); + border-radius: 5px; + padding: 6px 9px; + font-size: 12px; + color: var(--text); + font-family: monospace; + } + .sc-body textarea { + width: 100%; + min-height: 80px; + resize: vertical; + font-family: inherit; + } + .sc-raw { + border: 1px solid var(--border); + border-radius: 5px; + background: var(--bg); + } + .sc-raw summary { + padding: 6px 10px; + cursor: pointer; + font-size: 11px; + color: var(--text-dim); + user-select: none; + } + .sc-raw pre { + margin: 0; + padding: 8px 12px; + max-height: 240px; + overflow: auto; + font-size: 11px; + color: var(--text); + border-top: 1px solid var(--border); + } + .sc-footer { + display: flex; justify-content: flex-end; gap: 8px; + padding: 12px 18px; + border-top: 1px solid var(--border); + } + .sc-status { + flex: 1; align-self: center; + font-size: 11px; color: var(--text-mute); + } + .sc-status.error { color: #f85149; } + .sc-status.ok { color: #56d364; } + table.db-table tbody tr.clickable { cursor: pointer; } + table.db-table tbody tr.clickable:hover { background: var(--surface2); } + /* ── Section containers ── */ #section-live, #section-db { display: flex; @@ -654,6 +795,13 @@ +
+ +
+
+
+

Event

+ +
+
+
+

Event

+
+
Serial
+
Timestamp
+
Record type
+
Sample rate
+
Waveform key
+
+
+
+

Peaks

+
+
Tran
+
Vert
+
Long
+
PVS
+
Mic
+
+
+
+

Project

+
+
Project
+
Client
+
Operator
+
Location
+
+
+
+

Source / files

+
+
BW filename
+
BW filesize
+
BW sha256
+
Source kind
+
Captured at
+
+
+
+

Review (editable)

+
+ + +
+
+ + +
+ + +
+
+ Raw sidecar JSON (read-only peek) +

+      
+
+ +
+
+ diff --git a/sfm/waveform_store.py b/sfm/waveform_store.py new file mode 100644 index 0000000..8d39032 --- /dev/null +++ b/sfm/waveform_store.py @@ -0,0 +1,446 @@ +""" +sfm/waveform_store.py — On-disk store for Blastware-format event files. + +Layout (flat per-serial, four files per event): + + // ← event file (BW-readable binary) + //.a5.pkl ← pickled list of A5 S3Frame dicts + //.h5 ← clean waveform arrays (HDF5) + //.sfm.json ← modern sidecar (peaks, project, + review state, extensions) + +`` is whatever `minimateplus.blastware_file.blastware_filename` +produces for the event. The extension is NOT a fixed type tag — it +encodes the event timestamp (`AB0T` format). + +Roles: + - BW binary: what Blastware reads. Untouched. The user-facing review + waveform viewer. + - .a5.pkl: regenerative source. Lets the BW binary be rebuilt + byte-for-byte if the encoder changes. Never delete. + - .h5: clean per-channel waveform arrays in physical units (in/s for + geo, psi for mic) plus event metadata. Canonical format for + downstream analysis tools and the `/device/event/{idx}/waveform` + endpoint's plot-JSON output. + - .sfm.json: small, queryable metadata + review state. SQL + `events.false_trigger` is a derived index kept in sync via + `patch_sidecar()`. +""" + +from __future__ import annotations + +import datetime +import logging +import pickle +import shutil +from pathlib import Path +from typing import Optional + +from minimateplus import event_file_io +from minimateplus.blastware_file import blastware_filename, write_blastware_file +from minimateplus.framing import S3Frame +from minimateplus.models import Event +from sfm import event_hdf5 + +log = logging.getLogger("sfm.waveform_store") + +A5_PICKLE_VERSION = 1 + + +def _frame_to_dict(f: S3Frame) -> dict: + return { + "sub": f.sub, + "page_hi": f.page_hi, + "page_lo": f.page_lo, + "data": bytes(f.data), + "chk_byte": f.chk_byte, + "checksum_valid": f.checksum_valid, + } + + +def _dict_to_frame(d: dict) -> S3Frame: + return S3Frame( + sub=d["sub"], + page_hi=d["page_hi"], + page_lo=d["page_lo"], + data=bytes(d["data"]), + checksum_valid=d.get("checksum_valid", True), + chk_byte=d.get("chk_byte", 0), + ) + + +class WaveformStore: + """ + Persistent store for Blastware-format waveform files + their A5 source frames. + + Thread safety: write_blastware_file is single-shot; concurrent saves of the + *same* filename would race, but the filename encodes second-resolution + timestamps + serial, so collisions across threads/processes are vanishingly + unlikely in practice. + """ + + def __init__(self, root: str | Path) -> None: + self.root = Path(root) + self.root.mkdir(parents=True, exist_ok=True) + log.info("WaveformStore root=%s", self.root) + + # ── path helpers ──────────────────────────────────────────────────────────── + + def _serial_dir(self, serial: str) -> Path: + d = self.root / serial + d.mkdir(parents=True, exist_ok=True) + return d + + def paths_for(self, serial: str, filename: str) -> tuple[Path, Path]: + """Return (blastware_path, a5_pickle_path) for a given serial+filename. + + For the sidecar path use `sidecar_path_for()` — kept separate so + existing callers don't need to unpack a 3-tuple. + """ + d = self._serial_dir(serial) + return d / filename, d / f"{filename}.a5.pkl" + + def sidecar_path_for(self, serial: str, filename: str) -> Path: + """Return absolute path to the .sfm.json sidecar for a given event.""" + return self._serial_dir(serial) / f"{filename}.sfm.json" + + def hdf5_path_for(self, serial: str, filename: str) -> Path: + """Return absolute path to the .h5 clean-waveform file for a given event.""" + return self._serial_dir(serial) / f"{filename}.h5" + + def open_blastware(self, serial: str, filename: str) -> Optional[Path]: + """Return absolute path to an existing event file or None.""" + bw_path, _ = self.paths_for(serial, filename) + return bw_path if bw_path.exists() else None + + # ── save / load ───────────────────────────────────────────────────────────── + + def save( + self, + ev: Event, + serial: str, + a5_frames: list[S3Frame], + *, + source_kind: str = "sfm-live", + geo_range = "normal", + ) -> dict: + """ + Write all four event-file artifacts for one event: + - BW binary + - .a5.pkl raw A5 frame pickle + - .h5 clean waveform (HDF5) + - .sfm.json modern sidecar (metadata + review) + + Returns a record dict suitable for persisting alongside the DB row: + + { + "filename": "M529LKIQ.7M0W", + "filesize": 8708, + "sha256": "a1b2c3...", + "a5_pickle_filename": "M529LKIQ.7M0W.a5.pkl", + "hdf5_filename": "M529LKIQ.7M0W.h5", + "sidecar_filename": "M529LKIQ.7M0W.sfm.json", + } + + `source_kind` flows into `sidecar.source.kind` — callers should + pass "sfm-live" (default) for the live endpoint and "sfm-ach" for + the ACH ingestion path. BW-imported events use save_imported_bw() + instead. + + `geo_range` controls the ADC-counts → in/s scaling in the HDF5 + file ("normal" = 10 in/s FS, "sensitive" = 1.25 in/s FS). + Defaults to "normal" — callers with compliance-config access + should pass the actual unit setting so the saved samples are in + the right units. + + Idempotent: if the event file already exists, it is overwritten + with the freshly-encoded version (same bytes for the same + a5_frames) and the sidecar's review block is preserved across + re-saves. + """ + if not a5_frames: + raise ValueError("WaveformStore.save: a5_frames is empty") + if not serial: + raise ValueError("WaveformStore.save: serial is required") + + filename = blastware_filename(ev, serial) + bw_path, a5_path = self.paths_for(serial, filename) + sidecar_path = self.sidecar_path_for(serial, filename) + hdf5_path = self.hdf5_path_for(serial, filename) + + # 1. encode the event file (defensive unlink prevents trailing-byte + # leaks from a previous larger file on synced/odd filesystems). + try: + bw_path.unlink() + except FileNotFoundError: + pass + write_blastware_file(ev, a5_frames, bw_path) + filesize = bw_path.stat().st_size + sha256 = event_file_io.file_sha256(bw_path) + + # 2. write the .a5.pkl sidecar + try: + a5_path.unlink() + except FileNotFoundError: + pass + payload = { + "version": A5_PICKLE_VERSION, + "frames": [_frame_to_dict(f) for f in a5_frames], + } + with a5_path.open("wb") as fp: + pickle.dump(payload, fp, protocol=pickle.HIGHEST_PROTOCOL) + + # 3. write the .h5 clean-waveform file (samples in physical units). + # Best-effort: a write failure shouldn't sink the rest of the save + # (the HDF5 can be regenerated later from the .a5.pkl). + hdf5_filename: Optional[str] = None + try: + event_hdf5.write_event_hdf5( + hdf5_path, ev, + serial=serial, + geo_range=geo_range, + source_kind=source_kind, + ) + hdf5_filename = hdf5_path.name + except Exception as exc: + log.warning( + "save: HDF5 write failed for %s: %s — continuing without .h5", + hdf5_path, exc, + ) + + # 4. write the .sfm.json sidecar. Preserve any existing review + # block + extensions across re-saves so user edits aren't lost + # when the same event is re-downloaded (e.g. via Force refresh). + existing_review = None + existing_extensions = None + if sidecar_path.exists(): + try: + old = event_file_io.read_sidecar(sidecar_path) + existing_review = old.get("review") + existing_extensions = old.get("extensions") + except Exception as exc: + log.warning( + "save: existing sidecar at %s unreadable (%s); overwriting", + sidecar_path, exc, + ) + + sidecar = event_file_io.event_to_sidecar_dict( + ev, + serial=serial, + blastware_filename=filename, + blastware_filesize=filesize, + blastware_sha256=sha256, + source_kind=source_kind, + a5_pickle_filename=a5_path.name, + review=existing_review, + extensions=existing_extensions, + ) + event_file_io.write_sidecar(sidecar_path, sidecar) + + log.info( + "WaveformStore.save serial=%s filename=%s filesize=%d frames=%d " + "h5=%s sidecar=%s", + serial, filename, filesize, len(a5_frames), + hdf5_filename or "(skipped)", sidecar_path.name, + ) + return { + "filename": filename, + "filesize": filesize, + "sha256": sha256, + "a5_pickle_filename": a5_path.name, + "hdf5_filename": hdf5_filename, + "sidecar_filename": sidecar_path.name, + } + + def save_imported_bw( + self, + bw_bytes: bytes, + source_path: Path, + *, + serial_hint: Optional[str] = None, + ) -> tuple[Event, dict]: + """ + Ingest a Blastware event file produced by an external tool + (Blastware's own ACH, manual download, etc.) where the source A5 + frames aren't available. + + Workflow: + 1. Parse the bytes via event_file_io.read_blastware_file (writes + a temp file to do that, since the parser takes a path). + 2. Resolve serial from BW filename (`

...`) or use + serial_hint. Falls back to "UNKNOWN". + 3. Copy the BW bytes verbatim into //. + 4. Write the .sfm.json sidecar with source.kind = "bw-import" + and a5_pickle_filename = None. Does NOT write a .a5.pkl + (no A5 source available; byte-for-byte regeneration not + possible — the on-disk BW file IS the byte-for-byte source). + + Returns (event, record_dict) so callers can both insert into + SeismoDb and surface the parsed Event. + """ + # Stash the bytes to a temp path so read_blastware_file (path-based) + # can parse without us duplicating its logic. + import tempfile + with tempfile.NamedTemporaryFile(suffix=".bw", delete=False) as tmp: + tmp.write(bw_bytes) + tmp_path = Path(tmp.name) + try: + ev = event_file_io.read_blastware_file(tmp_path) + finally: + try: + tmp_path.unlink() + except FileNotFoundError: + pass + + # Resolve serial. blastware_filename derives a 4-char prefix from + # the numeric serial (e.g. BE11529 → M529); we go the other way + # via the source filename if a hint wasn't given. + serial = serial_hint or _serial_from_bw_filename(source_path.name) or "UNKNOWN" + + # Use the source filename verbatim — it already encodes timestamp + # + record type per BW's AB0T scheme, and we want to preserve it + # so the file BW knows about can be opened back in BW. + filename = source_path.name + bw_path = self._serial_dir(serial) / filename + + # 1. copy bytes + bw_path.write_bytes(bw_bytes) + filesize = bw_path.stat().st_size + sha256 = event_file_io.file_sha256(bw_path) + + # 2. write the .h5 clean-waveform file from the parsed Event. + # Note: peaks here are computed from raw samples (the BW file + # doesn't carry the device-authoritative 0C peaks). Best-effort. + hdf5_path = self.hdf5_path_for(serial, filename) + hdf5_filename: Optional[str] = None + try: + event_hdf5.write_event_hdf5( + hdf5_path, ev, + serial=serial, + geo_range="normal", # BW file doesn't carry the range; assume Normal + source_kind="bw-import", + ) + hdf5_filename = hdf5_path.name + except Exception as exc: + log.warning( + "save_imported_bw: HDF5 write failed for %s: %s — continuing", + hdf5_path, exc, + ) + + # 3. write sidecar with source.kind = bw-import + sidecar_path = self.sidecar_path_for(serial, filename) + existing_review = None + if sidecar_path.exists(): + try: + existing_review = event_file_io.read_sidecar(sidecar_path).get("review") + except Exception: + pass + + sidecar = event_file_io.event_to_sidecar_dict( + ev, + serial=serial, + blastware_filename=filename, + blastware_filesize=filesize, + blastware_sha256=sha256, + source_kind="bw-import", + a5_pickle_filename=None, + review=existing_review, + ) + event_file_io.write_sidecar(sidecar_path, sidecar) + + log.info( + "WaveformStore.save_imported_bw serial=%s filename=%s filesize=%d " + "h5=%s (no .a5.pkl — A5 source unavailable for BW-imported files)", + serial, filename, filesize, hdf5_filename or "(skipped)", + ) + return ev, { + "filename": filename, + "filesize": filesize, + "sha256": sha256, + "a5_pickle_filename": None, + "hdf5_filename": hdf5_filename, + "sidecar_filename": sidecar_path.name, + } + + def load_a5(self, serial: str, filename: str) -> Optional[list[S3Frame]]: + """ + Re-hydrate the pickled A5 frame stream for a stored event. + Returns None if the sidecar is missing. + """ + _, a5_path = self.paths_for(serial, filename) + if not a5_path.exists(): + return None + with a5_path.open("rb") as fp: + payload = pickle.load(fp) + if not isinstance(payload, dict) or "frames" not in payload: + log.warning("WaveformStore.load_a5: malformed sidecar at %s", a5_path) + return None + return [_dict_to_frame(d) for d in payload["frames"]] + + # ── modern .sfm.json sidecar accessors ────────────────────────────────────── + + def load_sidecar(self, serial: str, filename: str) -> Optional[dict]: + """Return the parsed .sfm.json sidecar dict, or None if missing.""" + path = self.sidecar_path_for(serial, filename) + if not path.exists(): + return None + try: + return event_file_io.read_sidecar(path) + except Exception as exc: + log.warning("load_sidecar: failed to read %s: %s", path, exc) + return None + + def patch_sidecar( + self, + serial: str, + filename: str, + *, + review: Optional[dict] = None, + extensions: Optional[dict] = None, + reviewer_now: bool = True, + ) -> Optional[dict]: + """ + JSON-merge-patch the .sfm.json sidecar's review/extensions blocks. + Returns the new full dict, or None if the sidecar doesn't exist. + """ + path = self.sidecar_path_for(serial, filename) + if not path.exists(): + return None + return event_file_io.patch_sidecar( + path, + review=review, + extensions=extensions, + reviewer_now=reviewer_now, + ) + + +# ── helpers ───────────────────────────────────────────────────────────────────── + +def _serial_from_bw_filename(name: str) -> Optional[str]: + """ + Reverse of `blastware_filename`'s serial-prefix encoding. + + BW filename format (V10.72): `

.` + where P = chr(ord('B') + floor(serial // 1000)) + and serial3 = f"{serial % 1000:03d}". + + Examples (from CLAUDE.md verification archive): + P036... → BE14036 H907... → BE6907 + M529... → BE11529 T003... → BE18003 + + Returns the inferred BE-prefix serial (e.g. "BE11529") or None when + the filename doesn't match the expected pattern. + """ + if not name: + return None + # First letter encodes the thousands group; next 3 chars encode the + # last 3 digits of the serial. + base = name.split(".", 1)[0] + if len(base) < 4 or not base[0].isalpha() or not base[1:4].isdigit(): + return None + prefix_letter = base[0].upper() + if prefix_letter < "B": + return None + thousands = ord(prefix_letter) - ord("B") + serial_num = thousands * 1000 + int(base[1:4]) + return f"BE{serial_num}" diff --git a/tests/test_cache_invalidation.py b/tests/test_cache_invalidation.py new file mode 100644 index 0000000..2d06814 --- /dev/null +++ b/tests/test_cache_invalidation.py @@ -0,0 +1,209 @@ +""" +test_cache_invalidation.py — verify post-erase key-reuse correctness. + +The device's event-key counter resets to 0x01110000 after every memory erase, +so a bare-key dedup (the old behaviour) silently treats a freshly-recorded +event 0 as if it were the previously-downloaded one. These tests exercise +the (key, timestamp)-based eviction logic in: + + - bridges/ach_server.py (state-file migration + force flag) + - sfm/server.py (_LiveCache.set_events / set_waveform) + +Run: + python tests/test_cache_invalidation.py +""" + +from __future__ import annotations + +import json +import os +import sys +import tempfile +from pathlib import Path + +try: + import pytest +except ImportError: + pytest = None # type: ignore + +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + + +# ── ACH state migration ─────────────────────────────────────────────────────── + + +def test_ach_state_legacy_migration(tmp_path: Path): + """ + Legacy v1 state with a `downloaded_keys` list is migrated on _load_state + to the v2 `downloaded_events` dict. All legacy keys come back with empty + timestamps so the (key, ts) compare in get_events() always falls through + to a fresh download. + """ + from bridges.ach_server import _load_state + + state_path = tmp_path / "ach_state.json" + legacy = { + "BE11529": { + "downloaded_keys": ["01110000", "0111245a"], + "max_downloaded_key": "0111245a", + "last_seen": "2026-04-11T01:04:36", + "serial": "BE11529", + "peer": "63.43.212.232:51920", + }, + } + state_path.write_text(json.dumps(legacy)) + + migrated = _load_state(state_path) + + unit = migrated["BE11529"] + assert "downloaded_keys" not in unit + assert unit["downloaded_events"] == { + "01110000": "", + "0111245a": "", + } + # max_downloaded_key is preserved verbatim + assert unit["max_downloaded_key"] == "0111245a" + + +def test_ach_state_v2_passes_through(tmp_path: Path): + """A v2 state file is returned verbatim — no migration touches it.""" + from bridges.ach_server import _load_state + + state_path = tmp_path / "ach_state.json" + v2 = { + "BE11529": { + "downloaded_events": { + "01110000": "2026-04-15T14:23:45", + "0111245a": "2026-04-16T09:01:12", + }, + "max_downloaded_key": "0111245a", + "serial": "BE11529", + }, + } + state_path.write_text(json.dumps(v2)) + + loaded = _load_state(state_path) + assert loaded["BE11529"]["downloaded_events"] == v2["BE11529"]["downloaded_events"] + + +def test_ach_state_missing_returns_empty(tmp_path: Path): + """Nonexistent state path → empty dict (not an error).""" + from bridges.ach_server import _load_state + assert _load_state(tmp_path / "absent.json") == {} + + +# ── _LiveCache eviction ─────────────────────────────────────────────────────── + + +def _ev(index: int, key: str, ts: str) -> dict: + return {"index": index, "waveform_key": key, "timestamp": ts} + + +def test_live_cache_set_events_no_eviction_when_keys_match(): + """No flush when incoming events match the cached (key, ts) at each index.""" + from sfm.live_cache import LiveCache as _LiveCache + + c = _LiveCache() + conn = "tcp:1.2.3.4:12345" + c.set_events(conn, 2, [_ev(0, "01110000", "2026-04-15T14:23:45"), + _ev(1, "0111245a", "2026-04-16T09:01:12")]) + c.set_waveform(conn, 0, _ev(0, "01110000", "2026-04-15T14:23:45")) + + # Same events again — must not flush. + c.set_events(conn, 2, [_ev(0, "01110000", "2026-04-15T14:23:45"), + _ev(1, "0111245a", "2026-04-16T09:01:12")]) + + assert c._events[conn][0] == 2 + assert (conn, 0) in c._waveforms + + +def test_live_cache_set_events_flushes_on_post_erase_collision(): + """ + Index 0 keeps the same key (01110000 reuses) but the timestamp differs + → device was erased + re-recorded → flush all events + waveforms for the + device. + """ + from sfm.live_cache import LiveCache as _LiveCache + + c = _LiveCache() + conn = "tcp:1.2.3.4:12345" + # First "session": index 0 key=01110000 ts=2026-04-15. + c.set_events(conn, 1, [_ev(0, "01110000", "2026-04-15T14:23:45")]) + c.set_waveform(conn, 0, _ev(0, "01110000", "2026-04-15T14:23:45")) + assert (conn, 0) in c._waveforms + + # Second "session" after erase: index 0 still key=01110000 but new ts. + c.set_events(conn, 1, [_ev(0, "01110000", "2026-05-06T12:34:56")]) + + # Stale waveform for index 0 must have been flushed by the eviction path + # before the new event was inserted. The new events list IS in cache but + # the cached waveform from the prior session is gone. + assert (conn, 0) not in c._waveforms + assert c._events[conn][1][0]["timestamp"] == "2026-05-06T12:34:56" + + +def test_live_cache_set_waveform_flushes_on_mismatch(): + """set_waveform alone should also evict when (key, ts) differs.""" + from sfm.live_cache import LiveCache as _LiveCache + + c = _LiveCache() + conn = "tcp:1.2.3.4:12345" + c.set_waveform(conn, 0, _ev(0, "01110000", "2026-04-15T14:23:45")) + c.set_waveform(conn, 1, _ev(1, "0111245a", "2026-04-16T09:01:12")) + + # Index 0 swap: same key, new timestamp. + c.set_waveform(conn, 0, _ev(0, "01110000", "2026-05-06T12:34:56")) + + # Index 1's stale waveform must be flushed — keeping it would mix eras. + assert (conn, 1) not in c._waveforms + # The newly-inserted index 0 entry is what's there. + assert c._waveforms[(conn, 0)]["timestamp"] == "2026-05-06T12:34:56" + + +def test_live_cache_partial_signature_does_not_flush(): + """ + If incoming event lacks waveform_key OR timestamp, we cannot prove a + mismatch — eviction must NOT trigger. Avoids spurious flushes from + legacy / partial event shapes. + """ + from sfm.live_cache import LiveCache as _LiveCache + + c = _LiveCache() + conn = "tcp:1.2.3.4:12345" + c.set_waveform(conn, 0, _ev(0, "01110000", "2026-04-15T14:23:45")) + + # Incoming entry missing the timestamp — cannot prove a mismatch. + c.set_waveform(conn, 0, {"index": 0, "waveform_key": "01110000"}) + + # Cache should contain the new entry; the implementation overwrites + # the index-0 row but does NOT flush other indices. Since there are no + # other indices in this test, just check the entry exists. + assert (conn, 0) in c._waveforms + + +if __name__ == "__main__": + if pytest is not None: + pytest.main([__file__, "-v"]) + else: + import inspect + import traceback as _tb + + passed = failed = 0 + for _name, _fn in sorted(globals().items()): + if not _name.startswith("test_") or not callable(_fn): + continue + try: + _sig = inspect.signature(_fn) + if "tmp_path" in _sig.parameters: + with tempfile.TemporaryDirectory() as _td: + _fn(Path(_td)) + else: + _fn() + print(f"PASS {_name}") + passed += 1 + except Exception: + print(f"FAIL {_name}") + _tb.print_exc() + failed += 1 + print(f"\n{passed} passed, {failed} failed") + sys.exit(0 if failed == 0 else 1) diff --git a/tests/test_event_file_io.py b/tests/test_event_file_io.py new file mode 100644 index 0000000..806d64f --- /dev/null +++ b/tests/test_event_file_io.py @@ -0,0 +1,348 @@ +""" +test_event_file_io.py — sidecar write/read/patch round-trips, +WaveformStore sidecar integration, and the BW-import path. + +Run: + python tests/test_event_file_io.py +""" + +from __future__ import annotations + +import json +import os +import sys +import tempfile +from pathlib import Path + +try: + import pytest +except ImportError: + pytest = None # type: ignore + +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + +from minimateplus import event_file_io +from minimateplus.framing import S3Frame +from minimateplus.models import Event, Timestamp + + +# ── Fixtures shared with test_waveform_store.py ─────────────────────────────── + + +def _make_synthetic_event() -> tuple[Event, list[S3Frame]]: + """Same shape as tests/test_waveform_store.py — minimum viable Event + + A5 stream that makes write_blastware_file emit a parseable file. + + STRT is exactly 21 bytes; rectime_seconds lands at byte 18 to match + `_decode_a5_waveform`'s expected layout (which is also what + `read_blastware_file()` reads back).""" + key4 = bytes.fromhex("01110000") + rectime = 3 + strt = bytearray(21) + strt[0:4] = b"STRT" + strt[4:6] = b"\xff\xfe" + strt[6:10] = key4 # end_key (per data[23:27] in CLAUDE.md) + strt[10:14] = key4 # start_key (per data[27:31]) + strt[18] = rectime + strt = bytes(strt) + + probe_data = bytes(7) + strt + bytes(32) + probe = S3Frame(sub=0xA5, page_hi=0x10, page_lo=0x00, data=probe_data, + checksum_valid=True, chk_byte=0x00) + + sample = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x10, + data=bytes(7) + bytes(0x0200), checksum_valid=True, + chk_byte=0x00) + + # Build a valid 26-byte footer (0e 08 + ts1 + ts2 + 6 const + 2 crc) + # and embed it at the END of the terminator's contribution so + # write_blastware_file finds the real `0e 08` marker rather than + # falling back to slicing the last 26 bytes of zero garbage. + # ts byte order: [day][month][year_HI][year_LO][0x00][hour][min][sec] + footer = ( + b"\x0e\x08" + + bytes([6, 5, 0x07, 0xea, 0, 12, 34, 56]) # ts1 = 2026-05-06 12:34:56 + + bytes([6, 5, 0x07, 0xea, 0, 12, 35, 6]) # ts2 = ts1 + ~10s + + b"\x00\x01\x00\x02\x00\x00" + + b"\x00\x00" + ) + assert len(footer) == 26 + term_data = bytes(11) + bytes(38) + footer # 11 prefix + 38 pad + 26 footer = 75 + term = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x00, + data=term_data, checksum_valid=True, chk_byte=0x00) + + ev = Event(index=0) + ev._waveform_key = key4 + ev.timestamp = Timestamp( + raw=b"", flag=0x10, year=2026, unknown_byte=0, + month=5, day=6, hour=12, minute=34, second=56, + ) + ev.rectime_seconds = rectime + ev.record_type = "Waveform" + ev._a5_frames = [probe, sample, term] + return ev, [probe, sample, term] + + +# ── Sidecar write/read round-trip ───────────────────────────────────────────── + + +def test_event_to_sidecar_dict_shape(): + ev, _ = _make_synthetic_event() + d = event_file_io.event_to_sidecar_dict( + ev, + serial="BE11529", + blastware_filename="M529LKIQ.7M0W", + blastware_filesize=1024, + blastware_sha256="abcd" * 16, + source_kind="sfm-live", + a5_pickle_filename="M529LKIQ.7M0W.a5.pkl", + ) + + assert d["schema_version"] == event_file_io.SCHEMA_VERSION + assert d["kind"] == event_file_io.SIDECAR_KIND + assert d["event"]["serial"] == "BE11529" + assert d["event"]["timestamp"] == "2026-05-06T12:34:56" + assert d["event"]["waveform_key"] == "01110000" + assert d["blastware"]["sha256"] == "abcd" * 16 + assert d["source"]["kind"] == "sfm-live" + assert d["review"] == { + "false_trigger": False, "reviewer": None, + "reviewed_at": None, "notes": "", + } + assert d["extensions"] == {} + + +def test_sidecar_write_and_read_round_trip(tmp_path: Path): + ev, _ = _make_synthetic_event() + path = tmp_path / "M529LKIQ.7M0W.sfm.json" + src = event_file_io.event_to_sidecar_dict( + ev, serial="BE11529", + blastware_filename="M529LKIQ.7M0W", blastware_filesize=1024, + blastware_sha256="x" * 64, source_kind="sfm-ach", + ) + event_file_io.write_sidecar(path, src) + loaded = event_file_io.read_sidecar(path) + assert loaded["event"] == src["event"] + assert loaded["blastware"] == src["blastware"] + assert loaded["source"]["kind"] == "sfm-ach" + + +def test_sidecar_rejects_unsupported_schema_version(tmp_path: Path): + path = tmp_path / "future.sfm.json" + path.write_text(json.dumps({ + "schema_version": event_file_io.SCHEMA_VERSION + 1, + "kind": event_file_io.SIDECAR_KIND, + })) + try: + event_file_io.read_sidecar(path) + except ValueError as exc: + assert "schema_version" in str(exc) + return + raise AssertionError("read_sidecar should have rejected unsupported version") + + +def test_sidecar_extensions_survive_round_trip(tmp_path: Path): + """Forward-compat: unknown keys inside `extensions` survive a r/w cycle.""" + ev, _ = _make_synthetic_event() + path = tmp_path / "x.sfm.json" + d = event_file_io.event_to_sidecar_dict( + ev, serial="BE11529", + blastware_filename="X", blastware_filesize=0, blastware_sha256="", + source_kind="sfm-live", + extensions={"vendor.acme.gps": {"lat": 40.7, "lon": -74.0}}, + ) + event_file_io.write_sidecar(path, d) + back = event_file_io.read_sidecar(path) + assert back["extensions"]["vendor.acme.gps"]["lat"] == 40.7 + + +def test_sidecar_patch_review_stamps_reviewed_at(tmp_path: Path): + ev, _ = _make_synthetic_event() + path = tmp_path / "patch.sfm.json" + event_file_io.write_sidecar( + path, + event_file_io.event_to_sidecar_dict( + ev, serial="BE11529", + blastware_filename="X", blastware_filesize=0, blastware_sha256="", + source_kind="sfm-live", + ), + ) + new = event_file_io.patch_sidecar( + path, + review={"false_trigger": True, "notes": "truck thump", "reviewer": "brian"}, + ) + assert new["review"]["false_trigger"] is True + assert new["review"]["notes"] == "truck thump" + assert new["review"]["reviewer"] == "brian" + assert new["review"]["reviewed_at"], "reviewed_at must be auto-stamped" + + on_disk = event_file_io.read_sidecar(path) + assert on_disk["review"]["false_trigger"] is True + + +# ── WaveformStore integration ───────────────────────────────────────────────── + + +def test_waveform_store_save_writes_sidecar(tmp_path: Path): + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + ev, frames = _make_synthetic_event() + rec = store.save(ev, serial="BE11529", a5_frames=frames, source_kind="sfm-live") + + assert rec["sidecar_filename"].endswith(".sfm.json") + assert rec["sha256"] and len(rec["sha256"]) == 64 + + sc = store.load_sidecar("BE11529", rec["filename"]) + assert sc is not None + assert sc["blastware"]["filename"] == rec["filename"] + assert sc["blastware"]["sha256"] == rec["sha256"] + assert sc["source"]["kind"] == "sfm-live" + # The .a5.pkl reference should match the actual filename on disk. + assert sc["source"]["a5_pickle_filename"] == rec["a5_pickle_filename"] + + +def test_waveform_store_save_preserves_review_across_resave(tmp_path: Path): + """Re-saving the same event must preserve a user's prior review edits.""" + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + ev, frames = _make_synthetic_event() + rec = store.save(ev, serial="BE11529", a5_frames=frames) + + # User flips false_trigger and adds a note. + store.patch_sidecar( + "BE11529", rec["filename"], + review={"false_trigger": True, "notes": "hello"}, + ) + + # A second save (e.g. Force refresh re-download) must keep those edits. + store.save(ev, serial="BE11529", a5_frames=frames) + sc = store.load_sidecar("BE11529", rec["filename"]) + assert sc["review"]["false_trigger"] is True + assert sc["review"]["notes"] == "hello" + + +def test_waveform_store_patch_sidecar_returns_none_when_missing(tmp_path: Path): + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + out = store.patch_sidecar("BE99999", "no.such.W", review={"notes": "x"}) + assert out is None + + +# ── DB integration: sidecar_filename column + update_event_review ───────────── + + +def test_seismodb_persists_sidecar_filename_and_review_sync(tmp_path: Path): + from sfm.database import SeismoDb + + db = SeismoDb(tmp_path / "seismo_relay.db") + ev, _ = _make_synthetic_event() + + rec = { + "filename": "M529LKIQ.7M0W", + "filesize": 8708, + "a5_pickle_filename": "M529LKIQ.7M0W.a5.pkl", + "sidecar_filename": "M529LKIQ.7M0W.sfm.json", + } + inserted, _ = db.insert_events( + [ev], serial="BE11529", + waveform_records={ev._waveform_key.hex(): rec}, + ) + assert inserted == 1 + + rows = db.query_events(serial="BE11529") + row = rows[0] + assert row["sidecar_filename"] == rec["sidecar_filename"] + + # update_event_review keeps false_trigger column in sync with sidecar. + assert db.update_event_review(row["id"], {"false_trigger": True}) is True + again = db.get_event(row["id"]) + assert again["false_trigger"] == 1 + + # Empty review block (no false_trigger key) → no-op but row exists. + assert db.update_event_review(row["id"], {"notes": "x"}) is True + + +# ── BW-file reader (read_blastware_file) ───────────────────────────────────── + + +def test_read_blastware_file_round_trip(tmp_path: Path): + """write → read → key/timestamp/rectime survive.""" + from minimateplus.blastware_file import write_blastware_file, blastware_filename + + ev, frames = _make_synthetic_event() + bw_path = tmp_path / blastware_filename(ev, "BE11529") + write_blastware_file(ev, frames, bw_path) + + parsed = event_file_io.read_blastware_file(bw_path) + assert parsed._waveform_key == ev._waveform_key + assert parsed.rectime_seconds == ev.rectime_seconds + # Timestamp lands via the footer; year/month/day/hour/min/sec all survive. + assert parsed.timestamp is not None + assert parsed.timestamp.year == ev.timestamp.year + assert parsed.timestamp.month == ev.timestamp.month + assert parsed.timestamp.day == ev.timestamp.day + assert parsed.timestamp.hour == ev.timestamp.hour + assert parsed.timestamp.minute == ev.timestamp.minute + assert parsed.timestamp.second == ev.timestamp.second + # No A5 source recoverable. + assert parsed._a5_frames is None + # Peaks computed from samples (synthetic = zero samples → zero peaks). + assert parsed.peak_values is not None + assert parsed.peak_values.peak_vector_sum == 0.0 + + +def test_save_imported_bw_round_trip(tmp_path: Path): + """save_imported_bw stores a copy + sidecar with source.kind = bw-import.""" + from minimateplus.blastware_file import write_blastware_file, blastware_filename + from sfm.waveform_store import WaveformStore + + # Produce a BW file outside the store. + ev, frames = _make_synthetic_event() + fname = blastware_filename(ev, "BE11529") + src = tmp_path / fname + write_blastware_file(ev, frames, src) + + store = WaveformStore(tmp_path / "waveforms") + parsed_ev, rec = store.save_imported_bw(src.read_bytes(), source_path=src) + + assert rec["filename"] == fname + assert rec["a5_pickle_filename"] is None # no A5 source for BW imports + sc = store.load_sidecar("BE11529", fname) + assert sc is not None + assert sc["source"]["kind"] == "bw-import" + assert sc["source"]["a5_pickle_filename"] is None + # The stored binary should match the source byte-for-byte (we just copied). + stored_path = store.open_blastware("BE11529", fname) + assert stored_path is not None + assert stored_path.read_bytes() == src.read_bytes() + + +if __name__ == "__main__": + if pytest is not None: + pytest.main([__file__, "-v"]) + else: + import inspect + import traceback as _tb + + passed = failed = 0 + for _name, _fn in sorted(globals().items()): + if not _name.startswith("test_") or not callable(_fn): + continue + try: + _sig = inspect.signature(_fn) + if "tmp_path" in _sig.parameters: + with tempfile.TemporaryDirectory() as _td: + _fn(Path(_td)) + else: + _fn() + print(f"PASS {_name}") + passed += 1 + except Exception: + print(f"FAIL {_name}") + _tb.print_exc() + failed += 1 + print(f"\n{passed} passed, {failed} failed") + sys.exit(0 if failed == 0 else 1) diff --git a/tests/test_event_hdf5.py b/tests/test_event_hdf5.py new file mode 100644 index 0000000..86c3336 --- /dev/null +++ b/tests/test_event_hdf5.py @@ -0,0 +1,296 @@ +""" +test_event_hdf5.py — HDF5 codec round-trip + plot.v1 JSON shape sanity. + +Run: + python tests/test_event_hdf5.py +""" + +from __future__ import annotations + +import os +import sys +import tempfile +from pathlib import Path + +try: + import pytest +except ImportError: + pytest = None # type: ignore + +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + +from minimateplus.framing import S3Frame +from minimateplus.models import Event, PeakValues, ProjectInfo, Timestamp +from sfm import event_hdf5 + + +# ── Fixtures ────────────────────────────────────────────────────────────────── + + +def _make_event_with_samples(n: int = 256) -> Event: + """An Event with synthetic int16 ADC samples on all four channels. + + Channel content: + - Tran: ramp from -16384 to +16383 (peak ≈ 5 in/s for Normal range) + - Vert: full-scale dirac at index n//2 (peak = 10 in/s) + - Long: zeros + - MicL: small ramp + Peak values are set on the event the way the device's 0C record + would supply them — used by the HDF5 writer for the mic per-count + factor. + """ + tran = [int((i / max(n - 1, 1)) * 32767 - 16384) for i in range(n)] + vert = [0] * n + if n: + vert[n // 2] = 32767 + long_ = [0] * n + mic = [int((i / max(n - 1, 1)) * 5000) for i in range(n)] + + ev = Event(index=0) + ev._waveform_key = bytes.fromhex("01110000") + ev.timestamp = Timestamp( + raw=b"", flag=0x10, + year=2026, unknown_byte=0, month=5, day=7, + hour=10, minute=0, second=0, + ) + ev.record_type = "Waveform" + ev.sample_rate = 1024 + ev.pretrig_samples = n // 4 + ev.total_samples = n + ev.rectime_seconds = n / 1024.0 + ev.raw_samples = {"Tran": tran, "Vert": vert, "Long": long_, "MicL": mic} + ev.peak_values = PeakValues( + tran=5.0, vert=10.0, long=0.0, + peak_vector_sum=10.0, micl=0.001, + ) + ev.project_info = ProjectInfo( + project="TestProj", client="TestClient", + operator="brian", sensor_location="loc-A", + ) + return ev + + +# ── HDF5 round-trip ─────────────────────────────────────────────────────────── + + +def test_hdf5_round_trip_preserves_metadata(tmp_path: Path): + ev = _make_event_with_samples() + h5 = tmp_path / "test.h5" + event_hdf5.write_event_hdf5( + h5, ev, serial="BE11529", geo_range="normal", + ) + + data = event_hdf5.read_event_hdf5(h5) + a = data["attrs"] + assert a["schema_version"] == event_hdf5.SCHEMA_VERSION + assert a["kind"] == event_hdf5.HDF5_KIND + assert a["serial"] == "BE11529" + assert a["waveform_key"] == "01110000" + assert a["sample_rate"] == 1024 + assert a["pretrig_samples"] == 64 + assert a["geo_range"] == "normal" + assert a["geo_full_scale_ips"] == 10.0 + assert a["project"] == "TestProj" + assert a["client"] == "TestClient" + assert a["operator"] == "brian" + # Float attrs may round-trip with tiny precision noise. + assert abs(a["peak_tran_ips"] - 5.0) < 1e-6 + assert abs(a["peak_vert_ips"] - 10.0) < 1e-6 + + +def test_hdf5_samples_in_physical_units_normal_range(tmp_path: Path): + """Vert hits ADC full-scale (32767) → with Normal range FS=10 in/s, + the HDF5 sample value should be ≈ 10 * 32767/32768 in/s.""" + ev = _make_event_with_samples() + h5 = tmp_path / "n.h5" + event_hdf5.write_event_hdf5(h5, ev, serial="BE11529", geo_range="normal") + data = event_hdf5.read_event_hdf5(h5) + + vert = data["samples"]["Vert"] + assert vert.dtype.name == "float32" + assert max(abs(v) for v in vert) > 9.99 # full-scale ≈ 10.0 + # The dirac was at n//2 → 32767 ADC counts. + expected_peak = 10.0 * 32767 / 32768 + assert abs(max(vert) - expected_peak) < 1e-3 + + +def test_hdf5_samples_in_physical_units_sensitive_range(tmp_path: Path): + """Same fixture but Sensitive range → full-scale 1.250 in/s.""" + ev = _make_event_with_samples() + h5 = tmp_path / "s.h5" + event_hdf5.write_event_hdf5(h5, ev, serial="BE11529", geo_range="sensitive") + data = event_hdf5.read_event_hdf5(h5) + + vert = data["samples"]["Vert"] + expected_peak = 1.250 * 32767 / 32768 + assert abs(max(vert) - expected_peak) < 1e-4 + + +def test_hdf5_includes_int16_samples(tmp_path: Path): + ev = _make_event_with_samples() + h5 = tmp_path / "i.h5" + event_hdf5.write_event_hdf5(h5, ev, serial="BE11529") + data = event_hdf5.read_event_hdf5(h5) + assert data["samples_int16"] is not None + assert "Tran" in data["samples_int16"] + assert data["samples_int16"]["Vert"].dtype.name == "int16" + + +def test_hdf5_rejects_unsupported_schema(tmp_path: Path): + """Round-tripping with a tampered schema_version raises ValueError.""" + import h5py + h5 = tmp_path / "future.h5" + with h5py.File(h5, "w") as f: + f.attrs["schema_version"] = 99 + f.attrs["kind"] = event_hdf5.HDF5_KIND + try: + event_hdf5.read_event_hdf5(h5) + except ValueError as exc: + assert "schema_version" in str(exc) + return + raise AssertionError("read_event_hdf5 should reject unsupported schema_version") + + +# ── plot.v1 JSON shape ──────────────────────────────────────────────────────── + + +def test_event_to_plot_json_shape(): + ev = _make_event_with_samples() + j = event_hdf5.event_to_plot_json(ev, serial="BE11529", geo_range="normal") + assert j["schema"] == "sfm.plot.v1" + assert j["serial"] == "BE11529" + assert j["geo_range"] == "normal" + assert j["geo_full_scale_ips"] == 10.0 + assert j["trigger_ms"] == 0.0 + + t = j["time_axis"] + assert t["sample_rate"] == 1024 + assert t["pretrig_samples"] == 64 + assert t["n_samples"] == 256 + # t0_ms = -pretrig * dt_ms = -64 * (1000/1024) ≈ -62.5 + assert abs(t["t0_ms"] - (-64 * 1000 / 1024)) < 1e-3 + assert abs(t["dt_ms"] - (1000 / 1024)) < 1e-6 + + chans = j["channels"] + for name in ("Tran", "Vert", "Long", "MicL"): + assert name in chans, f"missing channel: {name}" + assert chans[name]["unit"] in ("in/s", "psi") + assert "values" in chans[name] + assert "peak" in chans[name] + assert "peak_t_ms" in chans[name] + + # Values are in physical units: Vert peak ≈ 10 in/s. + assert max(chans["Vert"]["values"]) > 9.99 + + +def test_event_to_plot_json_peak_t_ms_locates_dirac(): + """The Vert channel's full-scale dirac at sample n//2 should produce + peak_t_ms = (n//2 - pretrig) * dt_ms.""" + ev = _make_event_with_samples(n=256) + j = event_hdf5.event_to_plot_json(ev, serial="BE11529") + expected = (128 - 64) * (1000 / 1024) # = 62.5 ms + assert abs(j["channels"]["Vert"]["peak_t_ms"] - expected) < 1e-2 + + +def test_plot_json_from_hdf5_round_trip(tmp_path: Path): + """plot_json_from_hdf5 produces the same shape as event_to_plot_json.""" + ev = _make_event_with_samples() + h5 = tmp_path / "rt.h5" + event_hdf5.write_event_hdf5(h5, ev, serial="BE11529", geo_range="normal") + + j_disk = event_hdf5.plot_json_from_hdf5(h5, event_id="abc-123") + j_mem = event_hdf5.event_to_plot_json(ev, serial="BE11529", geo_range="normal", event_id="abc-123") + + # Top-level shape parity + for k in ("schema", "serial", "geo_range", "geo_full_scale_ips", + "trigger_ms", "record_type", "waveform_key", "event_id"): + assert j_disk.get(k) == j_mem.get(k), f"mismatch on {k}" + assert j_disk["time_axis"]["sample_rate"] == j_mem["time_axis"]["sample_rate"] + assert j_disk["time_axis"]["n_samples"] == j_mem["time_axis"]["n_samples"] + + # Sample values must match within float32 precision. + for ch in ("Tran", "Vert", "Long", "MicL"): + a = j_disk["channels"][ch]["values"] + b = j_mem["channels"][ch]["values"] + assert len(a) == len(b) + if a: + mx = max(abs(x - y) for x, y in zip(a, b)) + assert mx < 1e-3, f"{ch}: max diff {mx}" + + +# ── WaveformStore integration with HDF5 ─────────────────────────────────────── + + +def _make_synthetic_event_for_save() -> tuple[Event, list[S3Frame]]: + """Same flavour as test_event_file_io.py but ensures _make_event_with_samples + is also wired into the BW write path so we can exercise WaveformStore.save.""" + ev = _make_event_with_samples(n=128) + # Build a minimum 3-frame A5 stream (probe + sample + term) — same + # shape used in the other test files. The encoder only really needs + # the STRT in the probe + a non-zero body and a footer in the term. + key4 = ev._waveform_key + rectime = int(ev.rectime_seconds or 0) or 1 + strt = bytearray(21) + strt[0:4] = b"STRT" + strt[4:6] = b"\xff\xfe" + strt[6:10] = key4 + strt[10:14] = key4 + strt[18] = rectime + probe = S3Frame(sub=0xA5, page_hi=0x10, page_lo=0x00, + data=bytes(7) + bytes(strt) + bytes(32), + checksum_valid=True, chk_byte=0x00) + sample = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x10, + data=bytes(7) + bytes(0x0200), checksum_valid=True, chk_byte=0x00) + footer = ( + b"\x0e\x08" + + bytes([7, 5, 0x07, 0xea, 0, 10, 0, 0]) + + bytes([7, 5, 0x07, 0xea, 0, 10, 0, 1]) + + b"\x00\x01\x00\x02\x00\x00\x00\x00" + ) + term = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x00, + data=bytes(11) + bytes(38) + footer, checksum_valid=True, chk_byte=0x00) + ev._a5_frames = [probe, sample, term] + return ev, [probe, sample, term] + + +def test_waveform_store_save_emits_hdf5(tmp_path: Path): + from sfm.waveform_store import WaveformStore + store = WaveformStore(tmp_path / "waveforms") + ev, frames = _make_synthetic_event_for_save() + rec = store.save(ev, serial="BE11529", a5_frames=frames, geo_range="normal") + + assert rec["hdf5_filename"], "hdf5_filename should be present in save() record" + h5 = store.hdf5_path_for("BE11529", rec["filename"]) + assert h5.exists(), "WaveformStore.save should produce a .h5 file" + # The HDF5 round-trip should match the event's metadata. + data = event_hdf5.read_event_hdf5(h5) + assert data["attrs"]["serial"] == "BE11529" + assert data["attrs"]["geo_range"] == "normal" + + +if __name__ == "__main__": + if pytest is not None: + pytest.main([__file__, "-v"]) + else: + import inspect + import traceback as _tb + + passed = failed = 0 + for _name, _fn in sorted(globals().items()): + if not _name.startswith("test_") or not callable(_fn): + continue + try: + _sig = inspect.signature(_fn) + if "tmp_path" in _sig.parameters: + with tempfile.TemporaryDirectory() as _td: + _fn(Path(_td)) + else: + _fn() + print(f"PASS {_name}") + passed += 1 + except Exception: + print(f"FAIL {_name}") + _tb.print_exc() + failed += 1 + print(f"\n{passed} passed, {failed} failed") + sys.exit(0 if failed == 0 else 1) diff --git a/tests/test_waveform_store.py b/tests/test_waveform_store.py new file mode 100644 index 0000000..601985e --- /dev/null +++ b/tests/test_waveform_store.py @@ -0,0 +1,302 @@ +""" +test_waveform_store.py — unit tests for sfm/waveform_store.py and the +SeismoDb columns + insert_events upsert path that the store depends on. + +These tests exercise the *store + DB plumbing* in isolation — they do not +re-test write_blastware_file (covered separately) and do not require a live +device or a wire capture. + +Run: + python -m pytest tests/test_waveform_store.py -v +""" + +from __future__ import annotations + +import os +import sys +import datetime +from pathlib import Path + +try: + import pytest +except ImportError: # allow running standalone without pytest installed + pytest = None # type: ignore + +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + +from minimateplus.framing import S3Frame +from minimateplus.models import Event, Timestamp + + +# ── Test fixtures ────────────────────────────────────────────────────────────── + + +def _make_synthetic_event() -> tuple[Event, list[S3Frame]]: + """ + Build a minimal Event + a 3-frame A5 stream that satisfies + write_blastware_file's STRT-extraction path. + + Frame 0 (probe): contains a STRT record at the canonical position so + write_blastware_file finds it without falling back. + Frame 1 (sample): 0x0200 bytes of zeros at page_key=0x0010 (sample marker). + Frame 2 (TERM): page_key=0x0000 marks the terminator. + """ + key4 = bytes.fromhex("01110000") + rectime = 3 + strt = b"STRT" + b"\xff\xfe" + key4 + key4 + bytes(7) + bytes([rectime]) + + # Probe payload prefix: 7 zero bytes then STRT (matches blastware_file._strip + # logic which looks for STRT in data[7:]). Tail with 32 zero bytes of fake + # body so reconstruction has something to slice. + probe_data = bytes(7) + strt + bytes(32) + probe = S3Frame(sub=0xA5, page_hi=0x10, page_lo=0x00, data=probe_data, + checksum_valid=True, chk_byte=0x00) + + sample = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x10, + data=bytes(7) + bytes(0x0200), checksum_valid=True, + chk_byte=0x00) + + term = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x00, + data=bytes(7) + bytes(64), checksum_valid=True, + chk_byte=0x00) + + ev = Event(index=0) + ev._waveform_key = key4 + ev.timestamp = Timestamp( + raw=b"", + flag=0x10, + year=2026, + unknown_byte=0, + month=5, + day=6, + hour=12, + minute=34, + second=56, + ) + ev.rectime_seconds = rectime + ev.record_type = "Waveform" + ev._a5_frames = [probe, sample, term] + return ev, [probe, sample, term] + + +# ── Frame round-trip ─────────────────────────────────────────────────────────── + + +def test_frame_dict_round_trip(): + """_frame_to_dict and _dict_to_frame must round-trip every field.""" + from sfm.waveform_store import _dict_to_frame, _frame_to_dict + + f = S3Frame( + sub=0xA5, page_hi=0x12, page_lo=0x34, + data=b"\x10\x02\x00\xab\xcd", + checksum_valid=False, + chk_byte=0x42, + ) + d = _frame_to_dict(f) + g = _dict_to_frame(d) + assert g.sub == f.sub + assert g.page_hi == f.page_hi + assert g.page_lo == f.page_lo + assert g.data == f.data + assert g.checksum_valid == f.checksum_valid + assert g.chk_byte == f.chk_byte + + +# ── Store save/load round-trip ───────────────────────────────────────────────── + + +def test_waveform_store_save_load_round_trip(tmp_path: Path): + """save() writes both files; load_a5() returns equivalent frames.""" + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + ev, frames = _make_synthetic_event() + + rec = store.save(ev, serial="BE11529", a5_frames=frames) + + assert rec["filename"].startswith("M529") + assert rec["filesize"] > 0 + assert rec["a5_pickle_filename"] == rec["filename"] + ".a5.pkl" + + bw_path = store.open_blastware("BE11529", rec["filename"]) + assert bw_path is not None + assert bw_path.exists() + assert bw_path.stat().st_size == rec["filesize"] + + # Sidecar exists and round-trips + loaded = store.load_a5("BE11529", rec["filename"]) + assert loaded is not None + assert len(loaded) == len(frames) + for orig, got in zip(frames, loaded): + assert got.sub == orig.sub + assert got.page_hi == orig.page_hi + assert got.page_lo == orig.page_lo + assert got.data == orig.data + + +def test_waveform_store_missing_returns_none(tmp_path: Path): + """open_blastware / load_a5 return None for nonexistent entries.""" + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + assert store.open_blastware("BE99999", "no_such.7M0W") is None + assert store.load_a5("BE99999", "no_such.7M0W") is None + + +def test_waveform_store_idempotent_save(tmp_path: Path): + """Saving the same event twice produces the same event-file bytes.""" + from sfm.waveform_store import WaveformStore + + store = WaveformStore(tmp_path / "waveforms") + ev, frames = _make_synthetic_event() + + rec1 = store.save(ev, serial="BE11529", a5_frames=frames) + bw_path = store.open_blastware("BE11529", rec1["filename"]) + bytes1 = bw_path.read_bytes() + + rec2 = store.save(ev, serial="BE11529", a5_frames=frames) + bytes2 = bw_path.read_bytes() + + assert rec1["filename"] == rec2["filename"] + assert bytes1 == bytes2 + + +# ── DB integration ──────────────────────────────────────────────────────────── + + +def test_seismodb_persists_waveform_columns(tmp_path: Path): + """insert_events writes the new columns when waveform_records is supplied.""" + from sfm.database import SeismoDb + + db = SeismoDb(tmp_path / "seismo_relay.db") + ev, _ = _make_synthetic_event() + + rec = { + "filename": "M529LKIQ.7M0W", + "filesize": 8708, + "a5_pickle_filename": "M529LKIQ.7M0W.a5.pkl", + } + inserted, skipped = db.insert_events( + [ev], + serial="BE11529", + waveform_records={ev._waveform_key.hex(): rec}, + ) + assert inserted == 1 + assert skipped == 0 + + rows = db.query_events(serial="BE11529") + assert len(rows) == 1 + row = rows[0] + assert row["blastware_filename"] == rec["filename"] + assert row["blastware_filesize"] == rec["filesize"] + assert row["a5_pickle_filename"] == rec["a5_pickle_filename"] + + # get_event by id returns the same fields + row2 = db.get_event(row["id"]) + assert row2 is not None + assert row2["blastware_filename"] == rec["filename"] + + +def test_seismodb_dedup_upserts_waveform_fields(tmp_path: Path): + """Re-inserting the same (serial, timestamp) refreshes waveform fields.""" + from sfm.database import SeismoDb + + db = SeismoDb(tmp_path / "seismo_relay.db") + ev, _ = _make_synthetic_event() + + db.insert_events([ev], serial="BE11529") # no waveform record yet + rows = db.query_events(serial="BE11529") + assert rows[0]["blastware_filename"] is None + + rec = { + "filename": "M529LKIQ.7M0W", + "filesize": 4242, + "a5_pickle_filename": "M529LKIQ.7M0W.a5.pkl", + } + inserted, skipped = db.insert_events( + [ev], + serial="BE11529", + waveform_records={ev._waveform_key.hex(): rec}, + ) + assert inserted == 0 # dedup'd + assert skipped == 1 + rows = db.query_events(serial="BE11529") + assert rows[0]["blastware_filename"] == rec["filename"] + assert rows[0]["blastware_filesize"] == 4242 + + +def test_seismodb_migration_adds_columns(tmp_path: Path): + """An existing DB without the new columns gets them added on init.""" + import sqlite3 + + db_path = tmp_path / "old.db" + # Build a "v0" events table without the new columns. + with sqlite3.connect(str(db_path)) as conn: + conn.executescript(""" + CREATE TABLE events ( + id TEXT PRIMARY KEY, + serial TEXT NOT NULL, + waveform_key TEXT NOT NULL, + session_id TEXT, + timestamp TEXT, + tran_ppv REAL, + vert_ppv REAL, + long_ppv REAL, + peak_vector_sum REAL, + mic_ppv REAL, + project TEXT, + client TEXT, + operator TEXT, + sensor_location TEXT, + sample_rate INTEGER, + record_type TEXT, + false_trigger INTEGER NOT NULL DEFAULT 0, + created_at TEXT NOT NULL DEFAULT (strftime('%Y-%m-%dT%H:%M:%SZ', 'now')), + UNIQUE(serial, timestamp) + ); + INSERT INTO events + (id, serial, waveform_key, timestamp) + VALUES + ('legacy-id', 'BE11529', '01110000', + '2026-04-01T12:00:00'); + """) + + # Initialise SeismoDb against the old DB — migration should run. + from sfm.database import SeismoDb + + db = SeismoDb(db_path) + rows = db.query_events(serial="BE11529") + assert len(rows) == 1 + assert rows[0]["blastware_filename"] is None + assert "blastware_filesize" in rows[0] + assert "a5_pickle_filename" in rows[0] + + +if __name__ == "__main__": + if pytest is not None: + pytest.main([__file__, "-v"]) + else: + # Standalone runner — does not require pytest. + import inspect + import tempfile + import traceback as _tb + + passed = failed = 0 + for _name, _fn in sorted(globals().items()): + if not _name.startswith("test_") or not callable(_fn): + continue + try: + _sig = inspect.signature(_fn) + if "tmp_path" in _sig.parameters: + with tempfile.TemporaryDirectory() as _td: + _fn(Path(_td)) + else: + _fn() + print(f"PASS {_name}") + passed += 1 + except Exception: + print(f"FAIL {_name}") + _tb.print_exc() + failed += 1 + print(f"\n{passed} passed, {failed} failed") + sys.exit(0 if failed == 0 else 1)