v0.20.0 -- Full s3 event parse and PDF creation. #28
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-1
@@ -1,6 +1,6 @@
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/bridges/captures/
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/example-events/
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/tests/fixtures/
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/manuals/
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# Python build artifacts
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@@ -12,7 +12,21 @@ implementation lives in `minimateplus/histogram_codec.py`.
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in-repo histogram fixture corpus decodes byte-exact against BW's
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ASCII export.
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24 regression tests pass against ~3,500 blocks across 5 fixtures.
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26 regression tests pass against ~3,500 blocks across 5 in-repo
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fixtures, plus a synthetic regression block taken from a real
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BE9558 prod event to lock in the uint8-peak interpretation.
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**Important correction (2026-05-21):** the per-channel peak count
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is `uint8` at byte[6]/[10]/[14]/[18], NOT `uint16 LE` at byte[6:8]
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etc. The N844 fixture corpus the original RE was done against has
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zero values in bytes [7]/[11]/[15]/[19] for every block, so the
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two interpretations happened to be equivalent. Cross-correlating
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non-N844 events (BE9558 Tran-drift, BE18003 Histogram+Continuous)
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against BW's per-interval ASCII export — 4 channels × ~1400 blocks
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per event × multiple events = 100% byte-exact only when the peak
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is read as uint8. Reading as uint16 LE produced peaks up to 268
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in/s per channel and 35× inflated PVS sums when first deployed to
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prod (rolled back, root-caused, and fixed in commit 7183b95+1).
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## Body format
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@@ -27,15 +41,21 @@ Each block represents one histogram interval. Block layout:
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[1] segment_id (uint8) 0x00..0x03 — 256 blocks per segment
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[2:4] block_ctr (uint16 LE) resets each segment (0x0100, 0x0101, …)
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[4:6] 0x000a (uint16 LE) constant marker (= 10)
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[6:8] T_peak_count uint16 LE Tran peak (count × 0.005 → in/s at Normal)
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[6] T_peak_count uint8 Tran peak (count × 0.005 → in/s at Normal,
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max 1.275 in/s — fits in uint8)
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[7] T_annotation uint8 empirically non-zero on intervals with sub-Hz
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or unmeasurable freq; meaning not fully RE'd
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[8:10] T_halfperiod uint16 LE Tran half-period in samples
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(freq_Hz = 512 / halfp; ≤ 5 means ">100 Hz")
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[10:12] V_peak_count uint16 LE Vert peak
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[10] V_peak_count uint8 Vert peak
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[11] V_annotation uint8
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[12:14] V_halfperiod uint16 LE Vert freq half-period
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[14:16] L_peak_count uint16 LE Long peak
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[14] L_peak_count uint8 Long peak
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[15] L_annotation uint8
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[16:18] L_halfperiod uint16 LE Long freq half-period
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[18:20] M_peak_count uint16 LE MicL peak count
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[18] M_peak_count uint8 MicL peak count
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(dB via waveform_codec.mic_count_to_db)
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[19] M_annotation uint8
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[20:22] M_halfperiod uint16 LE MicL freq half-period
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[22:24] 0x00 0x00 constant
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[24:28] 4-byte variable purpose unknown — possibly CRC,
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@@ -99,6 +119,16 @@ slot[8] = 9 → 512/9 = 56.9 → 57 Hz ✓ M_freq
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## What's NOT yet decoded
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- **Annotation bytes (`block[7]/[11]/[15]/[19]`)**. Empirically
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non-zero on intervals where the per-channel ZC frequency comes
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out as `N/A` or sub-Hz (`<1.0`, `1.X`). Hypothesis tested in the
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RE session: byte != 0 ↔ sub-Hz freq. Only ~50% correlation
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across the K558 corpus, so the relationship is more complex.
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Possibilities: time-of-peak-within-interval, halfp extension for
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very-long-period signals, or a debug/diagnostic field the firmware
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writes opportunistically. Doesn't affect peak amplitudes or
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waveform reconstruction. Captured as `record["annotations"]` for
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future RE.
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- **4-byte variable metadata field (bytes 24:28)**. Not needed for
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waveform reconstruction. Speculation: per-block CRC, sub-second
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timestamp offset, or a Mic psi(L) count not in the 9 samples.
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@@ -28,18 +28,32 @@ iterate 32-stride and stop before the tail.
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[1] segment_id (uint8) 0x00..0x03 — 256 blocks per segment
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[2:4] block_ctr (uint16 LE) resets each segment (0x0100, 0x0101, …)
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[4:6] 0x000a (uint16 LE) constant marker (= 10)
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[6:8] T_peak_count uint16 LE Tran peak (count × 0.005 → in/s)
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[6] T_peak_count uint8 Tran peak (count × 0.005 → in/s, max 1.275 in/s)
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[7] T_annotation uint8 empirically non-zero on intervals with sub-Hz
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or unmeasurable Tran freq; meaning not fully RE'd
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[8:10] T_halfperiod uint16 LE Tran half-period in samples (freq = 512 / halfp Hz)
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[10:12] V_peak_count uint16 LE
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[10] V_peak_count uint8
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[11] V_annotation uint8
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[12:14] V_halfperiod uint16 LE
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[14:16] L_peak_count uint16 LE
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[14] L_peak_count uint8
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[15] L_annotation uint8
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[16:18] L_halfperiod uint16 LE
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[18:20] M_peak_count uint16 LE MicL peak (count → dB via mic_count_to_db)
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[18] M_peak_count uint8 MicL peak (count → dB via mic_count_to_db)
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[19] M_annotation uint8
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[20:22] M_halfperiod uint16 LE MicL half-period in samples (freq = 512 / halfp Hz)
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[22:24] 0x00 0x00 constant
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[24:28] 4-byte variable purpose unknown (possibly CRC or timestamp delta)
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[28:32] 0x1e 0x0a 0x00 0x00 constant block-end signature
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NOTE on peak-count width: an earlier interpretation treated the peak
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fields as uint16 LE spanning [6:8] / [10:12] / [14:16] / [18:20].
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That happened to be byte-exact against the N844 fixture corpus only
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because every annotation byte in those fixtures was zero, making
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``uint16 LE == uint8``. Cross-correlating BE9558 (K558) Tran-drift
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and BE18003 (T003) Histogram+Continuous events against the BW ASCII
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export proved peak is uint8 alone — see test_histogram_codec.py
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and docs/histogram_codec_re_status.md.
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Block-identification anchor: ``block[22:24] == b"\\x00\\x00"`` AND
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``block[28:32] == b"\\x1e\\x0a\\x00\\x00"``. This is the reliable
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distinguisher from non-block content in the file.
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@@ -128,17 +142,40 @@ def _is_data_block(block: bytes) -> bool:
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return True
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def _decode_block(block: bytes) -> dict:
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def _decode_block(block: bytes) -> Optional[dict]:
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"""Decode one 32-byte histogram block. Caller must have validated
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with ``_is_data_block`` first."""
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# All 16-bit fields are little-endian unsigned. Peak counts are
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# always non-negative; half-periods are always positive when valid.
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t_peak, t_halfp, v_peak, v_halfp, l_peak, l_halfp, m_peak, m_halfp = struct.unpack_from(
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"<HHHHHHHH", block, 6
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)
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with ``_is_data_block`` first.
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Returns a record with per-channel peak counts (uint8) and
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half-periods (uint16 LE).
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"""
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# Peak counts are uint8 at bytes [6] / [10] / [14] / [18]. The
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# adjacent bytes [7] / [11] / [15] / [19] hold an annotation field
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# whose meaning isn't fully understood (empirically non-zero in
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# intervals with sub-Hz or unmeasurable geo frequencies, mostly
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# zero otherwise — see test fixtures from BE9558/BE18003 corpora).
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# Crucially, those annotation bytes are NOT the high byte of the
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# peak count: cross-correlating against BW's per-interval ASCII
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# export proves the peak is uint8 alone.
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#
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# Reading the peak as uint16 LE (the original interpretation) was
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# accidentally correct only because every block in the N844 fixture
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# corpus had a zero annotation byte; non-N844 events with non-zero
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# annotation bytes decoded to physically impossible peaks (e.g.
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# 268 in/s per channel) and produced 35× inflated PVS sums when
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# first run against prod data. See histogram_codec_re_status.md.
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t_peak = block[6]
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v_peak = block[10]
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l_peak = block[14]
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m_peak = block[18]
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t_halfp = block[8] | (block[9] << 8)
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v_halfp = block[12] | (block[13] << 8)
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l_halfp = block[16] | (block[17] << 8)
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m_halfp = block[20] | (block[21] << 8)
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segment_id = block[1]
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block_ctr = block[2] | (block[3] << 8)
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var_meta = bytes(block[24:28])
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annotations = (block[7], block[11], block[15], block[19])
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return {
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"segment_id": segment_id,
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"block_ctr": block_ctr,
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@@ -151,6 +188,7 @@ def _decode_block(block: bytes) -> dict:
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"m_peak": m_peak,
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"m_halfp": m_halfp,
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"meta_var": var_meta,
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"annotations": annotations,
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}
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@@ -160,6 +198,13 @@ def walk_body(body: bytes) -> List[dict]:
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Iterates 32-byte strides from offset 0. Yields a decoded record
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for every block that passes ``_is_data_block`` validation. Stops
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when the remaining bytes are too short to form a complete block.
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In Histogram+Continuous mode the body interleaves data blocks with
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other 32-byte content (likely continuous-mode waveform blocks) that
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fail the data-block validation; the walker naturally skips them
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without losing 32-byte alignment. Use ``block_ctr`` from each
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returned record to map back to the original interval index — the
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record list is sparse when other block types are interleaved.
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"""
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records: List[dict] = []
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for off in range(0, len(body) - _BLOCK_SIZE + 1, _BLOCK_SIZE):
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@@ -169,7 +214,13 @@ def walk_body(body: bytes) -> List[dict]:
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# Continue walking — block alignment is fixed at 32-stride
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# from offset 0, so we don't lose alignment by skipping.
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continue
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records.append(_decode_block(blk))
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decoded = _decode_block(blk)
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if decoded is None:
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# Block validated as a histogram block but had peak fields
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# outside the plausible range — undocumented extension.
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# Skip rather than propagating bogus PVS contributions.
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continue
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records.append(decoded)
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return records
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@@ -54,14 +54,26 @@ log = logging.getLogger("backfill_sidecars")
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def _looks_like_event_file(path: Path) -> bool:
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"""Same heuristic as the importer CLI."""
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"""Same heuristic as the importer CLI.
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Filters to BW (Series III) event files only — Thor (Series IV)
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`.IDFW` / `.IDFH` files share the store but have their own ingest
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path (`WaveformStore.save_imported_idf`) and are NOT decodable by
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`event_file_io.read_blastware_file`. Their sidecars are populated
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at ingest from the paired `.IDFW.txt` ASCII report; nothing the
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backfill regenerates would improve on them, so we exclude them
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from scope.
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"""
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if not path.is_file():
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return False
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if path.name.endswith((".a5.pkl", ".sfm.json")):
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if path.name.endswith((".a5.pkl", ".sfm.json", ".h5")):
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return False
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ext = path.suffix.lstrip(".")
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if not (3 <= len(ext) <= 4):
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return False
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# Thor IDF files share the .{W,H}-suffix shape but aren't BW.
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if ext.upper() in ("IDFW", "IDFH"):
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return False
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if not (ext[-1].upper() in {"W", "H"} or ext.endswith("0")):
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return False
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try:
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@@ -275,16 +287,25 @@ def main(argv=None) -> int:
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or ev.total_samples < derived // 4):
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ev.total_samples = derived
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# Preserve user-edited review state + extensions from the
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# existing sidecar (false_trigger flag, notes, etc.) so a
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# backfill never wipes them out.
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# Preserve user-edited review state + extensions + the
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# bw_report block from the existing sidecar so a backfill
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# never wipes them out. The bw_report block originates
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# from the paired .TXT ASCII report parsed at ORIGINAL
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# import time (ach forward / direct upload); the .TXT
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# file is not in the waveform store, so we can't re-derive
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# it from disk. event_to_sidecar_dict takes a
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# BwAsciiReport dataclass (not a dict), so for bw_report
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# we overlay the existing block after regen instead of
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# passing it as a kwarg.
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preserved_review = None
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preserved_ext = None
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preserved_bw_report = None
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if sidecar_path.exists():
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try:
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_existing = event_file_io.read_sidecar(sidecar_path)
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preserved_review = _existing.get("review")
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preserved_ext = _existing.get("extensions")
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preserved_bw_report = _existing.get("bw_report")
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except Exception:
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pass
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@@ -299,6 +320,8 @@ def main(argv=None) -> int:
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review=preserved_review,
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extensions=preserved_ext,
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)
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if preserved_bw_report is not None:
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sidecar["bw_report"] = preserved_bw_report
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# Also emit the .h5 clean-waveform file when:
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# - it's missing, OR
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@@ -0,0 +1,185 @@
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"""
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scripts/check_bw_report_preservation.py — verify that running backfill_sidecars
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doesn't wipe the `bw_report` block from sidecars that already had one.
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Two-step workflow:
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# Before running backfill — capture a baseline snapshot:
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python scripts/check_bw_report_preservation.py snapshot \
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--store-root /path/to/waveforms \
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--out before.json
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# Run backfill:
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python scripts/backfill_sidecars.py --store-root /path/to/waveforms --force
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# After backfill — diff against the baseline:
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python scripts/check_bw_report_preservation.py diff \
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--store-root /path/to/waveforms \
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--baseline before.json
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The diff classifies every sidecar into one of:
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PRESERVED had bw_report before, has same hash now ← GOOD
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CHANGED had bw_report before, has different hash now ← suspicious
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(backfill should only ever copy the block verbatim)
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WIPED had bw_report before, doesn't now ← BUG — data loss
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STILL_MISSING didn't have bw_report before, still doesn't ← expected
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NEW didn't have bw_report before, has one now
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(only possible if a re-ingest happened between snapshots;
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shouldn't happen during backfill)
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REMOVED sidecar existed in baseline, file is gone now
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ADDED sidecar didn't exist in baseline, exists now
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Exit code is 0 if no WIPED or CHANGED entries are found, 1 otherwise.
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"""
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from __future__ import annotations
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import argparse
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import hashlib
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import json
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import sys
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from pathlib import Path
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from typing import Optional
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# Allow running from the repo root without installation.
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sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
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from minimateplus import event_file_io
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def _bw_report_hash(sidecar_data: dict) -> Optional[str]:
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"""Canonical-JSON hash of the bw_report block, or None if absent."""
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br = sidecar_data.get("bw_report")
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if not br:
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return None
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# sort_keys for stable hashing across dict-ordering differences
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blob = json.dumps(br, sort_keys=True, separators=(",", ":"))
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return hashlib.sha256(blob.encode()).hexdigest()
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def _scan_store(store_root: Path) -> dict:
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"""Walk every <serial>/<file>.sfm.json and return {relpath: hash_or_None}.
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Relpath is `<serial>/<filename>` — stable across machines/snapshots.
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"""
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out: dict[str, Optional[str]] = {}
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for serial_dir in sorted(p for p in store_root.iterdir() if p.is_dir()):
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for sidecar in sorted(serial_dir.glob("*.sfm.json")):
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relpath = f"{serial_dir.name}/{sidecar.name}"
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try:
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data = event_file_io.read_sidecar(sidecar)
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except Exception as exc:
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print(f" WARN: failed to read {relpath}: {exc}", file=sys.stderr)
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continue
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out[relpath] = _bw_report_hash(data)
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return out
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def cmd_snapshot(args) -> int:
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store_root = Path(args.store_root).expanduser().resolve()
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if not store_root.exists():
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print(f"error: store root does not exist: {store_root}", file=sys.stderr)
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return 2
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out_path = Path(args.out).expanduser().resolve()
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print(f"Scanning {store_root} …")
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snapshot = _scan_store(store_root)
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with_bw = sum(1 for v in snapshot.values() if v is not None)
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without_bw = sum(1 for v in snapshot.values() if v is None)
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print(f" total sidecars: {len(snapshot)}")
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print(f" with bw_report: {with_bw}")
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print(f" without bw_report: {without_bw}")
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out_path.parent.mkdir(parents=True, exist_ok=True)
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with open(out_path, "w") as f:
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json.dump({
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"store_root": str(store_root),
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"total": len(snapshot),
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"with_bw": with_bw,
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"sidecars": snapshot,
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}, f, indent=2, sort_keys=True)
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print(f"Wrote baseline → {out_path}")
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return 0
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def cmd_diff(args) -> int:
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store_root = Path(args.store_root).expanduser().resolve()
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if not store_root.exists():
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print(f"error: store root does not exist: {store_root}", file=sys.stderr)
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return 2
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baseline_path = Path(args.baseline).expanduser().resolve()
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if not baseline_path.exists():
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print(f"error: baseline file not found: {baseline_path}", file=sys.stderr)
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return 2
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with open(baseline_path) as f:
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baseline = json.load(f)
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before = baseline["sidecars"]
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print(f"Scanning {store_root} for comparison against {baseline_path.name} …")
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after = _scan_store(store_root)
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classes = {k: [] for k in (
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"PRESERVED", "CHANGED", "WIPED", "STILL_MISSING", "NEW", "REMOVED", "ADDED",
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)}
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all_keys = set(before) | set(after)
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for key in sorted(all_keys):
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b = before.get(key, "__MISSING__")
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a = after.get(key, "__MISSING__")
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if b == "__MISSING__":
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classes["ADDED"].append(key)
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elif a == "__MISSING__":
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classes["REMOVED"].append(key)
|
||||
elif b is None and a is None:
|
||||
classes["STILL_MISSING"].append(key)
|
||||
elif b is None and a is not None:
|
||||
classes["NEW"].append(key)
|
||||
elif b is not None and a is None:
|
||||
classes["WIPED"].append(key)
|
||||
elif b == a:
|
||||
classes["PRESERVED"].append(key)
|
||||
else:
|
||||
classes["CHANGED"].append(key)
|
||||
|
||||
print()
|
||||
print(f"{'class':16s} {'count':>7s}")
|
||||
print("-" * 24)
|
||||
for k in ("PRESERVED", "STILL_MISSING", "CHANGED", "WIPED",
|
||||
"NEW", "ADDED", "REMOVED"):
|
||||
print(f"{k:16s} {len(classes[k]):>7d}")
|
||||
|
||||
# Show samples of the concerning classes
|
||||
for k in ("WIPED", "CHANGED"):
|
||||
if classes[k]:
|
||||
print(f"\n=== {k} samples (up to 10) ===")
|
||||
for key in classes[k][:10]:
|
||||
print(f" {key}")
|
||||
|
||||
if classes["WIPED"] or classes["CHANGED"]:
|
||||
print("\n*** Preservation broken: WIPED or CHANGED entries present ***")
|
||||
return 1
|
||||
print("\nbw_report preservation looks intact.")
|
||||
return 0
|
||||
|
||||
|
||||
def main(argv=None) -> int:
|
||||
p = argparse.ArgumentParser(description=__doc__)
|
||||
sub = p.add_subparsers(dest="cmd", required=True)
|
||||
|
||||
p_snap = sub.add_parser("snapshot", help="capture baseline bw_report hashes")
|
||||
p_snap.add_argument("--store-root", required=True)
|
||||
p_snap.add_argument("--out", required=True, help="output JSON path")
|
||||
p_snap.set_defaults(func=cmd_snapshot)
|
||||
|
||||
p_diff = sub.add_parser("diff", help="diff current store against a baseline")
|
||||
p_diff.add_argument("--store-root", required=True)
|
||||
p_diff.add_argument("--baseline", required=True, help="JSON from `snapshot`")
|
||||
p_diff.set_defaults(func=cmd_diff)
|
||||
|
||||
args = p.parse_args(argv)
|
||||
return args.func(args)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
sys.exit(main())
|
||||
@@ -335,3 +335,51 @@ def test_geo_count_to_ins_scale():
|
||||
assert geo_count_to_ins(1) == pytest.approx(0.005)
|
||||
assert geo_count_to_ins(10) == pytest.approx(0.050)
|
||||
assert geo_count_to_ins(0) == 0.0
|
||||
|
||||
|
||||
# ── Regression: peak is uint8 byte[N], NOT uint16 LE byte[N:N+2] ────────────
|
||||
#
|
||||
# Block taken verbatim from K558LKZU.RE0H (BE9558) interval 12 — a real
|
||||
# field event where the Tran channel had developed a DC offset and was
|
||||
# producing sub-Hz drift content the device couldn't characterize.
|
||||
# The annotation byte at [7] = 0xd2 is non-zero in that case. The
|
||||
# legacy codec read [6:8] as uint16 LE, producing T_peak = 53763 →
|
||||
# 268 in/s — physically impossible and 35× too high for the actual
|
||||
# 0.015 in/s value (T_lo = 3 alone gives the correct count).
|
||||
# Verified against the paired BW ASCII export.
|
||||
_K558_INTERVAL_12_BLOCK = bytes.fromhex(
|
||||
"00 00 0c 01 0a 00 03 d2 45 00 02 00 02 00 02 00"
|
||||
"02 00 10 00 06 00 00 00 0e 91 2f 00 1e 0a 00 00".replace(" ", "")
|
||||
)
|
||||
|
||||
|
||||
def test_extension_byte_does_not_inflate_peak():
|
||||
"""The annotation byte at [7]/[11]/[15]/[19] must NOT contribute to
|
||||
the peak count. Decoded T_peak must be 3 (uint8 byte[6]), NOT
|
||||
53763 (uint16 LE byte[6:8])."""
|
||||
body = _K558_INTERVAL_12_BLOCK
|
||||
records = decode_histogram_body_full(body)
|
||||
assert records is not None
|
||||
assert len(records) == 1
|
||||
r = records[0]
|
||||
assert r["t_peak"] == 3, f"T_peak should be 3 (uint8), got {r['t_peak']}"
|
||||
assert r["v_peak"] == 2
|
||||
assert r["l_peak"] == 2
|
||||
assert r["m_peak"] == 16
|
||||
# Half-periods unchanged — still uint16 LE.
|
||||
assert r["t_halfp"] == 0x0045 # 69 → 7.4 Hz
|
||||
assert r["m_halfp"] == 6 # → 85.3 Hz
|
||||
# Annotation byte is preserved (for future RE) but does not affect peak.
|
||||
assert r["annotations"] == (0xd2, 0x00, 0x00, 0x00)
|
||||
|
||||
|
||||
def test_extension_byte_decoded_to_correct_in_s():
|
||||
"""End-to-end: the channel-grouped output for the K558 ext block
|
||||
should give T = 3 counts = 0.015 in/s, not 53763 counts = 268 in/s."""
|
||||
channels = decode_histogram_body(_K558_INTERVAL_12_BLOCK)
|
||||
assert channels is not None
|
||||
assert channels["Tran"] == [3]
|
||||
assert geo_count_to_ins(channels["Tran"][0]) == pytest.approx(0.015)
|
||||
assert channels["Vert"] == [2]
|
||||
assert channels["Long"] == [2]
|
||||
assert channels["MicL"] == [16]
|
||||
|
||||
Reference in New Issue
Block a user