fa9d3cdef2
Fixes a data-loss bug discovered while dry-running the backfill against
the prod store.
Symptom: every histogram event in the store has its body decoded by
read_blastware_file → codec returns None → samples = empty dict →
``ev.peak_values = _peaks_from_samples(empty)`` returns
``PeakValues(0, 0, 0, 0, 0)`` (NOT None). The backfill script's
existing "seed from DB row when peak_values is None" branch then
correctly *skips* the seeding, and the all-zeros PeakValues flows into
``db.insert_events()``'s UPSERT path, OVERWRITING the existing good DB
peak values for that event (which were populated from the paired BW
ASCII report at ingest).
Net effect: running the backfill on prod would have wiped the PPV /
mic / vector-sum columns for ~10,000 histogram events.
Fix: only compute peaks-from-samples when there are actually samples.
For events the codec couldn't decode (histogram-mode bodies, until
the §7.6.2 histogram codec is wired in), leave peak_values=None as
the "we don't know" signal. Downstream consumers:
- backfill_sidecars.py — its existing ``if ev.peak_values is None:``
branch (line 243) seeds from the DB row, preserving the real
BW-report peaks across the regen.
- WaveformStore.save_imported_bw — apply_report_to_event overlays
peaks from the paired BW ASCII report when one was uploaded.
Histogram imports without a paired report end up with NULL peaks
in the DB, which is correct (better than zeros — clearly says
"no peak data available" rather than "peaks are exactly zero").
Updated the existing synthetic-event round-trip test to expect
peak_values=None for the no-real-body case, which is the truth now.
The 7 fixture-corpus regression tests for real BW waveforms continue
to pass — those have decodable samples, so peak_values is still
populated from the codec output as before.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
558 lines
22 KiB
Python
558 lines
22 KiB
Python
"""
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test_event_file_io.py — sidecar write/read/patch round-trips,
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WaveformStore sidecar integration, and the BW-import path.
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Run:
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python tests/test_event_file_io.py
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"""
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from __future__ import annotations
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import json
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import os
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import sys
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import tempfile
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from pathlib import Path
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try:
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import pytest
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except ImportError:
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pytest = None # type: ignore
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sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
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from minimateplus import event_file_io
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from minimateplus.framing import S3Frame
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from minimateplus.models import Event, Timestamp
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# ── Fixtures shared with test_waveform_store.py ───────────────────────────────
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def _make_synthetic_event() -> tuple[Event, list[S3Frame]]:
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"""Same shape as tests/test_waveform_store.py — minimum viable Event +
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A5 stream that makes write_blastware_file emit a parseable file.
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STRT is exactly 21 bytes; rectime_seconds lands at byte 18 to match
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`_decode_a5_waveform`'s expected layout (which is also what
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`read_blastware_file()` reads back)."""
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key4 = bytes.fromhex("01110000")
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rectime = 3
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strt = bytearray(21)
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strt[0:4] = b"STRT"
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strt[4:6] = b"\xff\xfe"
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strt[6:10] = key4 # end_key (per data[23:27] in CLAUDE.md)
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strt[10:14] = key4 # start_key (per data[27:31])
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strt[18] = rectime
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strt = bytes(strt)
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probe_data = bytes(7) + strt + bytes(32)
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probe = S3Frame(sub=0xA5, page_hi=0x10, page_lo=0x00, data=probe_data,
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checksum_valid=True, chk_byte=0x00)
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sample = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x10,
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data=bytes(7) + bytes(0x0200), checksum_valid=True,
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chk_byte=0x00)
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# Build a valid 26-byte footer (0e 08 + ts1 + ts2 + 6 const + 2 crc)
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# and embed it at the END of the terminator's contribution so
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# write_blastware_file finds the real `0e 08` marker rather than
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# falling back to slicing the last 26 bytes of zero garbage.
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# ts byte order: [day][month][year_HI][year_LO][0x00][hour][min][sec]
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footer = (
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b"\x0e\x08"
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+ bytes([6, 5, 0x07, 0xea, 0, 12, 34, 56]) # ts1 = 2026-05-06 12:34:56
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+ bytes([6, 5, 0x07, 0xea, 0, 12, 35, 6]) # ts2 = ts1 + ~10s
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+ b"\x00\x01\x00\x02\x00\x00"
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+ b"\x00\x00"
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)
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assert len(footer) == 26
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term_data = bytes(11) + bytes(38) + footer # 11 prefix + 38 pad + 26 footer = 75
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term = S3Frame(sub=0xA5, page_hi=0x00, page_lo=0x00,
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data=term_data, checksum_valid=True, chk_byte=0x00)
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ev = Event(index=0)
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ev._waveform_key = key4
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ev.timestamp = Timestamp(
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raw=b"", flag=0x10, year=2026, unknown_byte=0,
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month=5, day=6, hour=12, minute=34, second=56,
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)
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ev.rectime_seconds = rectime
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ev.record_type = "Waveform"
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ev._a5_frames = [probe, sample, term]
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return ev, [probe, sample, term]
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# ── Sidecar write/read round-trip ─────────────────────────────────────────────
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def test_event_to_sidecar_dict_shape():
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ev, _ = _make_synthetic_event()
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d = event_file_io.event_to_sidecar_dict(
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ev,
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serial="BE11529",
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blastware_filename="M529LKIQ.7M0W",
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blastware_filesize=1024,
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blastware_sha256="abcd" * 16,
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source_kind="sfm-live",
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a5_pickle_filename="M529LKIQ.7M0W.a5.pkl",
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)
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assert d["schema_version"] == event_file_io.SCHEMA_VERSION
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assert d["kind"] == event_file_io.SIDECAR_KIND
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assert d["event"]["serial"] == "BE11529"
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assert d["event"]["timestamp"] == "2026-05-06T12:34:56"
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assert d["event"]["waveform_key"] == "01110000"
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assert d["blastware"]["sha256"] == "abcd" * 16
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assert d["source"]["kind"] == "sfm-live"
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assert d["review"] == {
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"false_trigger": False, "reviewer": None,
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"reviewed_at": None, "notes": "",
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}
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assert d["extensions"] == {}
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def test_sidecar_write_and_read_round_trip(tmp_path: Path):
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ev, _ = _make_synthetic_event()
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path = tmp_path / "M529LKIQ.7M0W.sfm.json"
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src = event_file_io.event_to_sidecar_dict(
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ev, serial="BE11529",
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blastware_filename="M529LKIQ.7M0W", blastware_filesize=1024,
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blastware_sha256="x" * 64, source_kind="sfm-ach",
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)
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event_file_io.write_sidecar(path, src)
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loaded = event_file_io.read_sidecar(path)
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assert loaded["event"] == src["event"]
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assert loaded["blastware"] == src["blastware"]
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assert loaded["source"]["kind"] == "sfm-ach"
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def test_sidecar_rejects_unsupported_schema_version(tmp_path: Path):
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path = tmp_path / "future.sfm.json"
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path.write_text(json.dumps({
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"schema_version": event_file_io.SCHEMA_VERSION + 1,
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"kind": event_file_io.SIDECAR_KIND,
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}))
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try:
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event_file_io.read_sidecar(path)
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except ValueError as exc:
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assert "schema_version" in str(exc)
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return
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raise AssertionError("read_sidecar should have rejected unsupported version")
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def test_sidecar_extensions_survive_round_trip(tmp_path: Path):
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"""Forward-compat: unknown keys inside `extensions` survive a r/w cycle."""
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ev, _ = _make_synthetic_event()
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path = tmp_path / "x.sfm.json"
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d = event_file_io.event_to_sidecar_dict(
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ev, serial="BE11529",
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blastware_filename="X", blastware_filesize=0, blastware_sha256="",
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source_kind="sfm-live",
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extensions={"vendor.acme.gps": {"lat": 40.7, "lon": -74.0}},
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)
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event_file_io.write_sidecar(path, d)
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back = event_file_io.read_sidecar(path)
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assert back["extensions"]["vendor.acme.gps"]["lat"] == 40.7
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def test_sidecar_patch_review_stamps_reviewed_at(tmp_path: Path):
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ev, _ = _make_synthetic_event()
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path = tmp_path / "patch.sfm.json"
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event_file_io.write_sidecar(
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path,
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event_file_io.event_to_sidecar_dict(
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ev, serial="BE11529",
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blastware_filename="X", blastware_filesize=0, blastware_sha256="",
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source_kind="sfm-live",
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),
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)
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new = event_file_io.patch_sidecar(
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path,
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review={"false_trigger": True, "notes": "truck thump", "reviewer": "brian"},
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)
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assert new["review"]["false_trigger"] is True
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assert new["review"]["notes"] == "truck thump"
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assert new["review"]["reviewer"] == "brian"
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assert new["review"]["reviewed_at"], "reviewed_at must be auto-stamped"
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on_disk = event_file_io.read_sidecar(path)
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assert on_disk["review"]["false_trigger"] is True
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# ── WaveformStore integration ─────────────────────────────────────────────────
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def test_waveform_store_save_writes_sidecar(tmp_path: Path):
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from sfm.waveform_store import WaveformStore
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store = WaveformStore(tmp_path / "waveforms")
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ev, frames = _make_synthetic_event()
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rec = store.save(ev, serial="BE11529", a5_frames=frames, source_kind="sfm-live")
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assert rec["sidecar_filename"].endswith(".sfm.json")
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assert rec["sha256"] and len(rec["sha256"]) == 64
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sc = store.load_sidecar("BE11529", rec["filename"])
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assert sc is not None
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assert sc["blastware"]["filename"] == rec["filename"]
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assert sc["blastware"]["sha256"] == rec["sha256"]
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assert sc["source"]["kind"] == "sfm-live"
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# The .a5.pkl reference should match the actual filename on disk.
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assert sc["source"]["a5_pickle_filename"] == rec["a5_pickle_filename"]
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def test_waveform_store_save_preserves_review_across_resave(tmp_path: Path):
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"""Re-saving the same event must preserve a user's prior review edits."""
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from sfm.waveform_store import WaveformStore
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store = WaveformStore(tmp_path / "waveforms")
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ev, frames = _make_synthetic_event()
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rec = store.save(ev, serial="BE11529", a5_frames=frames)
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# User flips false_trigger and adds a note.
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store.patch_sidecar(
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"BE11529", rec["filename"],
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review={"false_trigger": True, "notes": "hello"},
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)
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# A second save (e.g. Force refresh re-download) must keep those edits.
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store.save(ev, serial="BE11529", a5_frames=frames)
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sc = store.load_sidecar("BE11529", rec["filename"])
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assert sc["review"]["false_trigger"] is True
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assert sc["review"]["notes"] == "hello"
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def test_waveform_store_patch_sidecar_returns_none_when_missing(tmp_path: Path):
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from sfm.waveform_store import WaveformStore
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store = WaveformStore(tmp_path / "waveforms")
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out = store.patch_sidecar("BE99999", "no.such.W", review={"notes": "x"})
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assert out is None
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# ── DB integration: sidecar_filename column + update_event_review ─────────────
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def test_seismodb_persists_sidecar_filename_and_review_sync(tmp_path: Path):
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from sfm.database import SeismoDb
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db = SeismoDb(tmp_path / "seismo_relay.db")
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ev, _ = _make_synthetic_event()
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rec = {
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"filename": "M529LKIQ.7M0W",
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"filesize": 8708,
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"a5_pickle_filename": "M529LKIQ.7M0W.a5.pkl",
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"sidecar_filename": "M529LKIQ.7M0W.sfm.json",
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}
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inserted, _ = db.insert_events(
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[ev], serial="BE11529",
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waveform_records={ev._waveform_key.hex(): rec},
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)
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assert inserted == 1
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rows = db.query_events(serial="BE11529")
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row = rows[0]
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assert row["sidecar_filename"] == rec["sidecar_filename"]
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# update_event_review keeps false_trigger column in sync with sidecar.
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assert db.update_event_review(row["id"], {"false_trigger": True}) is True
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again = db.get_event(row["id"])
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assert again["false_trigger"] == 1
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# Empty review block (no false_trigger key) → no-op but row exists.
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assert db.update_event_review(row["id"], {"notes": "x"}) is True
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# ── BW-file reader (read_blastware_file) ─────────────────────────────────────
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def test_read_blastware_file_round_trip(tmp_path: Path):
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"""write → read → key/timestamp/rectime survive."""
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from minimateplus.blastware_file import write_blastware_file, blastware_filename
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ev, frames = _make_synthetic_event()
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bw_path = tmp_path / blastware_filename(ev, "BE11529")
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write_blastware_file(ev, frames, bw_path)
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parsed = event_file_io.read_blastware_file(bw_path)
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assert parsed._waveform_key == ev._waveform_key
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assert parsed.rectime_seconds == ev.rectime_seconds
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# Timestamp lands via the footer; year/month/day/hour/min/sec all survive.
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assert parsed.timestamp is not None
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assert parsed.timestamp.year == ev.timestamp.year
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assert parsed.timestamp.month == ev.timestamp.month
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assert parsed.timestamp.day == ev.timestamp.day
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assert parsed.timestamp.hour == ev.timestamp.hour
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assert parsed.timestamp.minute == ev.timestamp.minute
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assert parsed.timestamp.second == ev.timestamp.second
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# No A5 source recoverable.
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assert parsed._a5_frames is None
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# The synthetic event has no real waveform body, so the codec can't
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# decode samples → read_blastware_file leaves peak_values=None
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# (the "we don't know" signal) rather than fabricating all-zero
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# peaks that would otherwise overwrite real DB values via UPSERT.
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assert parsed.peak_values is None
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assert parsed.raw_samples is not None
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# Empty channels — codec returned None for the malformed synthetic body.
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for ch in ("Tran", "Vert", "Long", "MicL"):
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assert parsed.raw_samples[ch] == []
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_BW_CODEC_FIXTURES = [
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# (path, expected_n_samples_per_channel, BW-reported Vert PPV in/s for sanity)
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("tests/fixtures/decode-re-5-8-26/event-a/M529LKVQ.6S0", 3328, 0.780),
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("tests/fixtures/decode-re-5-8-26/event-b/M529LK5Q.RG0", 2304, 0.505),
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("tests/fixtures/decode-re-5-8-26/event-c/M529LK44.AB0", 1280, 0.610),
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("tests/fixtures/decode-re-5-8-26/event-d/M529LK2V.470", 1280, 0.565),
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("tests/fixtures/5-11-26/M529LL1L.V70", 3328, 0.010),
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("tests/fixtures/5-11-26/M529LL1L.JQ0", 3328, 3.465),
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]
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@pytest.mark.parametrize("path,expected_n,expected_ppv", _BW_CODEC_FIXTURES)
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def test_read_blastware_file_decodes_via_codec(path: str, expected_n: int, expected_ppv: float):
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"""Regression lock: ``read_blastware_file()`` must use the verified
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waveform-body codec (``minimateplus.waveform_codec``), not the
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retracted int16-LE assumption.
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Verifies against the real BW fixture corpus: every event in the
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bundled fixtures must produce the expected per-channel sample count
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and a Vert PPV close to BW's own reported value. Catches any
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accidental regression of the body decoder back to the old
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``_decode_samples_4ch_int16_le`` path (which produced ±32K noise
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on every event, giving wildly wrong PPVs).
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"""
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repo_root = Path(__file__).resolve().parent.parent
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full_path = repo_root / path
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if not full_path.exists():
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pytest.skip(f"fixture missing: {full_path}")
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ev = event_file_io.read_blastware_file(full_path)
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assert ev.raw_samples is not None
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for ch in ("Tran", "Vert", "Long"):
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assert len(ev.raw_samples[ch]) == expected_n, (
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f"{ch}: expected {expected_n} samples, got {len(ev.raw_samples[ch])}"
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)
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# PPV check: the codec produces decoded samples in 1-count ADC units;
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# _peaks_from_samples scales by GEO_NORMAL_FS_INS / 32767. BW's own
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# PPV is computed at slightly different precision/interpolation, so
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# we allow a 0.2 in/s tolerance — well under the broken-decoder
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# signature (which would produce ~10 in/s saturation).
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assert ev.peak_values is not None
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assert abs(ev.peak_values.vert - expected_ppv) < 0.2, (
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f"Vert PPV {ev.peak_values.vert:.3f} differs from BW's "
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f"{expected_ppv:.3f} by >0.2 in/s — codec regression?"
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)
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def test_read_blastware_file_v70_samples_match_txt_truth():
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"""Strongest regression lock: every one of V70's 3328 decoded
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sample-sets must match the .TXT ground truth table within the
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0.005 in/s display quantum."""
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repo_root = Path(__file__).resolve().parent.parent
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bw_path = repo_root / "tests/fixtures/5-11-26/M529LL1L.V70"
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txt_path = repo_root / "tests/fixtures/5-11-26/M529LL1L.V70.TXT"
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if not bw_path.exists() or not txt_path.exists():
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pytest.skip(f"V70 fixture missing")
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import re
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ev = event_file_io.read_blastware_file(bw_path)
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# Parse .TXT ground truth sample table
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text = txt_path.read_text()
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lines = text.splitlines()
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hdr_idx = next(i for i, line in enumerate(lines)
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if re.match(r"^Tran\s+Vert\s+Long\s+MicL?", line.strip()))
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truth = []
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for line in lines[hdr_idx + 1:]:
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parts = line.strip().split()
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if len(parts) != 4:
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continue
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try:
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truth.append([float(x) for x in parts])
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except ValueError:
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continue
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assert len(truth) == 3328, f"expected 3328 truth rows, got {len(truth)}"
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def adc_to_ins(count):
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return count / 32767.0 * 10.0
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for i, truth_row in enumerate(truth):
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for ch_idx, ch_name in enumerate(("Tran", "Vert", "Long")):
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decoded_ips = adc_to_ins(ev.raw_samples[ch_name][i])
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truth_ips = truth_row[ch_idx]
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# 0.003 in/s tolerance: <0.005 quantum + small float precision room
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assert abs(decoded_ips - truth_ips) < 0.003, (
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f"row {i} {ch_name}: decoded {decoded_ips:+.4f} vs "
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f"truth {truth_ips:+.4f} (delta {decoded_ips - truth_ips:+.4f})"
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)
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def test_save_imported_bw_with_paired_report(tmp_path: Path):
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"""save_imported_bw + a paired BW ASCII report fold the report's
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rich derived fields into the sidecar. This is the daemon-forwarded
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ACH workflow: BW writes <event>.AB0 and <event>.AB0.TXT side by side;
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the daemon ships both; we overlay the report-decoded values onto the
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sidecar (peaks, project, plus the rich `bw_report` block)."""
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from minimateplus.blastware_file import write_blastware_file, blastware_filename
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from sfm.waveform_store import WaveformStore
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ev, frames = _make_synthetic_event()
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fname = blastware_filename(ev, "BE11529")
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src = tmp_path / fname
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write_blastware_file(ev, frames, src)
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# Use one of the real BW ASCII exports as the paired report.
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report_path = (
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Path(__file__).parent.parent
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/ "decode-re" / "5-8-26" / "event-c" / "M529LK44.AB0.TXT"
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)
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if not report_path.exists():
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import pytest as _pt
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_pt.skip("decode-re fixtures not present")
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report_bytes = report_path.read_bytes()
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store = WaveformStore(tmp_path / "waveforms")
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parsed_ev, rec = store.save_imported_bw(
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src.read_bytes(),
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source_path=src,
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bw_report_text=report_bytes,
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)
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sc = store.load_sidecar("BE11529", fname)
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assert sc is not None
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# ── bw_report block populated with the rich fields ──────────────────
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assert "bw_report" in sc
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br = sc["bw_report"]
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assert br["available"] is True
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assert br["event_type"] == "Full Waveform"
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assert br["recording"]["sample_rate_sps"] == 1024
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assert br["recording"]["geo_range_ips"] == 10.0
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|
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# Per-channel derived stats
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assert br["peaks"]["tran"]["ppv_ips"] == 0.065
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assert br["peaks"]["vert"]["ppv_ips"] == 0.610
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assert br["peaks"]["long"]["ppv_ips"] == 0.070
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assert br["peaks"]["vert"]["peak_accel_g"] == 0.437
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assert br["peaks"]["vert"]["peak_disp_in"] == 0.006
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assert br["peaks"]["tran"]["zc_freq_hz"] == 47.0
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assert br["peaks"]["vector_sum"]["ips"] == 0.612
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assert br["peaks"]["vector_sum"]["time_s"] == 0.024
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|
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# Sensor self-check per channel
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assert br["sensor_check"]["tran"]["freq_hz"] == 7.4
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assert br["sensor_check"]["tran"]["ratio"] == 3.7
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assert br["sensor_check"]["tran"]["result"] == "Passed"
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assert br["sensor_check"]["mic"]["amplitude_mv"] == 533.0
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|
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# Mic block
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assert br["mic"]["weighting"] == "Linear Weighting"
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assert br["mic"]["pspl_dbl"] == 88.0
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|
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# Monitor log roundtripped
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assert len(br["monitor_log"]) == 1
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assert "2026-04-23T15:46:16" in br["monitor_log"][0]["start"]
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assert br["pc_sw_version"] == "V 10.74"
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|
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# ── Overlay onto canonical peak_values ──────────────────────────────
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# Report values win over the broken-codec samples-derived peaks.
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assert sc["peak_values"]["transverse"] == 0.065
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assert sc["peak_values"]["vertical"] == 0.610
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assert sc["peak_values"]["longitudinal"] == 0.070
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assert sc["peak_values"]["vector_sum"] == 0.612
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# Mic PSPL converted to psi (dbl=88 → 10^(88/20) * 2.9e-9)
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assert sc["peak_values"]["mic_psi"] is not None
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assert 1e-5 < sc["peak_values"]["mic_psi"] < 1e-3
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|
|
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# ── Overlay onto project_info ───────────────────────────────────────
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assert sc["project_info"]["project"] == "Test4-21-26"
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assert sc["project_info"]["client"] == "Test-Client1"
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|
assert sc["project_info"]["operator"] == "Brian and claude"
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assert sc["project_info"]["sensor_location"] == "catbed"
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|
|
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# ── Event timestamp overlaid from report ───────────────────────────
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assert sc["event"]["timestamp"] == "2026-04-23T15:56:35"
|
|
|
|
|
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def test_save_imported_bw_without_report_works_unchanged(tmp_path: Path):
|
|
"""Calling save_imported_bw with no bw_report_text behaves exactly
|
|
as before — no `bw_report` block, peak_values come from samples."""
|
|
from minimateplus.blastware_file import write_blastware_file, blastware_filename
|
|
from sfm.waveform_store import WaveformStore
|
|
|
|
ev, frames = _make_synthetic_event()
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|
fname = blastware_filename(ev, "BE11529")
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|
src = tmp_path / fname
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write_blastware_file(ev, frames, src)
|
|
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store = WaveformStore(tmp_path / "waveforms")
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store.save_imported_bw(src.read_bytes(), source_path=src)
|
|
|
|
sc = store.load_sidecar("BE11529", fname)
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assert sc is not None
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|
assert "bw_report" not in sc # block is absent without a report
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|
# Synthetic event has zero samples → peaks all zero (was true before this change)
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|
assert sc["peak_values"]["transverse"] == 0.0
|
|
|
|
|
|
def test_save_imported_bw_round_trip(tmp_path: Path):
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|
"""save_imported_bw stores a copy + sidecar with source.kind = bw-import."""
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|
from minimateplus.blastware_file import write_blastware_file, blastware_filename
|
|
from sfm.waveform_store import WaveformStore
|
|
|
|
# Produce a BW file outside the store.
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|
ev, frames = _make_synthetic_event()
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|
fname = blastware_filename(ev, "BE11529")
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|
src = tmp_path / fname
|
|
write_blastware_file(ev, frames, src)
|
|
|
|
store = WaveformStore(tmp_path / "waveforms")
|
|
parsed_ev, rec = store.save_imported_bw(src.read_bytes(), source_path=src)
|
|
|
|
assert rec["filename"] == fname
|
|
assert rec["a5_pickle_filename"] is None # no A5 source for BW imports
|
|
# The serial decoded from the BW filename surfaces on the record so
|
|
# the import endpoint can use it when calling SeismoDb.insert_events()
|
|
# (otherwise forwarded events would all bucket into serial="UNKNOWN").
|
|
assert rec["serial"] == "BE11529"
|
|
sc = store.load_sidecar("BE11529", fname)
|
|
assert sc is not None
|
|
assert sc["source"]["kind"] == "bw-import"
|
|
assert sc["source"]["a5_pickle_filename"] is None
|
|
# The stored binary should match the source byte-for-byte (we just copied).
|
|
stored_path = store.open_blastware("BE11529", fname)
|
|
assert stored_path is not None
|
|
assert stored_path.read_bytes() == src.read_bytes()
|
|
|
|
|
|
if __name__ == "__main__":
|
|
if pytest is not None:
|
|
pytest.main([__file__, "-v"])
|
|
else:
|
|
import inspect
|
|
import traceback as _tb
|
|
|
|
passed = failed = 0
|
|
for _name, _fn in sorted(globals().items()):
|
|
if not _name.startswith("test_") or not callable(_fn):
|
|
continue
|
|
try:
|
|
_sig = inspect.signature(_fn)
|
|
if "tmp_path" in _sig.parameters:
|
|
with tempfile.TemporaryDirectory() as _td:
|
|
_fn(Path(_td))
|
|
else:
|
|
_fn()
|
|
print(f"PASS {_name}")
|
|
passed += 1
|
|
except Exception:
|
|
print(f"FAIL {_name}")
|
|
_tb.print_exc()
|
|
failed += 1
|
|
print(f"\n{passed} passed, {failed} failed")
|
|
sys.exit(0 if failed == 0 else 1)
|